Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02143 ATGGATTCCGAGTTTCCTAACAAAGCATTAACCTCCACCCGTTTTTCCGAGCTTAAACCGCCACTTTCCGATCCCGTTCTTCAAGCTCTCACACACTCCGGCTTCGATTTCTGCACTCCCGTTCAAGCCGCCACCATTCCTTTACTCTGTAGCTTCAAAGACGTCGCCGTTGATGCCGCCACTGGTTCAGGAAAAACCCTAGCTTTCGTCATTCCTCTTGTTGAAATTCTTCGCCGCAACTCTTCCAATCCCAAACCTCACCAGGTATTGGGAATAATTATATCTCCTACAAGGGAACTAGCATCCCAAATATATCATGTTGCACAGCCTTTTATATCAAGTTTAACGAATGTTAAGTCGATGCTACTCGTCGGTGGAGTGGAAGTAAAAACTGATATGAAGAAAATTGAGGAAGAAGGAGCTAACATATTGATCGCCACGCCTGGTCGATTACATGACATAATGAATAGGATGGATGTTATGGATTTCAAAAGCTTTGAGATTTTGATTTTGGACGAGGCTGATAGACTATTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTCAGTTGCCTAAGCTTCGAAGAACTGGCCTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGGTTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACAAAAAGAATGAACGATTCTGCTGCATCAAAGCATCCAGAATCTTCAAAGATACCTTCAGGTCTTCACATTGAGTACATGGAATGTGAGGCAGATAAGAAACCATCACAGCTGGTAGATTTCCTTGTTAAGAACCGTTCGAAAAAAATTATAATATATTATATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTTCTTCCCCGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATCCCCCTTCATGGAAAGATGAAGCAGACTGTCAGGGAGAAGGCACTAACTTCTTTTACATCCCTTTCAAATGGAGTTCTTCTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCGTACATAGGTCTGGTCGAACTGCTCGGTTGGGTAAACAAGGGCATGCTGTGGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTTTTGCGTATAAGAGGAGTTCCTCTTCAAGAGAGAACGTGCTCCGACAATGCACCTGATGTTGTACCTGAGATTCGTTCTGCGGCAACAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGTGCTTATAAAGAGCATCACTGTTCGTATATTTTCAGGTGGAAAGAACTTGAAATCGGCAAATTAGCTACCGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGGTAAAACGCCACTCACTATCCACTGAGGGATTTGAACCGGTTAAAGATATCAATTTCGAGGACATTAAGTTCAGGGATAAATCAAGGGAGAAGCAACGGAAGAAAAACCTGCTAGTAAAGAAAGAAGCCAAAGTAAAAGAGCCAAAACCTAAAAAACTAAAGAAAACTCCAAATGTGCCTATTGCCATGAGGAAGAAAACAGCCAAACAGAGACGTGCTCAGCAGACCATTGAAGATGAGGAAGAGTTGACGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGAATGAATATGCCAAGTTGACAGGCACTGAGGATTTACTTTGA 1770 0.4271 MDSEFPNKALTSTRFSELKPPLSDPVLQALTHSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRNSSNPKPHQVLGIIISPTRELASQIYHVAQPFISSLTNVKSMLLVGGVEVKTDMKKIEEEGANILIATPGRLHDIMNRMDVMDFKSFEILILDEADRLLDMGFQKQINAIITQLPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKRMNDSAASKHPESSKIPSGLHIEYMECEADKKPSQLVDFLVKNRSKKIIIYYMTCACVDYWGVVLPRLSVLKGFSLIPLHGKMKQTVREKALTSFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRSGRTARLGKQGHAVVFLLPKEESYVEFLRIRGVPLQERTCSDNAPDVVPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEVKRHSLSTEGFEPVKDINFEDIKFRDKSREKQRKKNLLVKKEAKVKEPKPKKLKKTPNVPIAMRKKTAKQRRAQQTIEDEEELTQEYRLLKKLKKGTIDENEYAKLTGTEDLL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02143 589 PANTHER RNA HELICASE 11 520 - -
Trre6g02143 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Trre6g02143 589 CDD DEADc_DDX55 26 224 - -
Trre6g02143 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 419 IPR001650 -
Trre6g02143 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Trre6g02143 589 FunFam RNA helicase 9 227 - -
Trre6g02143 589 CDD SF2_C_DEAD 254 384 - -
Trre6g02143 589 Gene3D - 253 478 IPR027417 -
Trre6g02143 589 SMART helicmild6 290 375 IPR001650 -
Trre6g02143 589 SMART ultradead3 34 254 IPR014001 -
Trre6g02143 589 Coils Coil 539 569 - -
Trre6g02143 589 Gene3D - 3 227 IPR027417 -
Trre6g02143 589 SMART DUF4217_3 413 476 IPR025313 -
Trre6g02143 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Trre6g02143 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Trre6g02143 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Trre6g02143 589 Pfam Domain of unknown function (DUF4217) 416 472 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02143 Trre-Chr6 18105285 18110021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02143 17 389 Eukaryotic Initiation Factors Gene Family AT1G72730 28.342 3.18e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02143 K14809 - gmx:100801482 991.875