Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02140 ATGCTCCAGGAACTTCCCATTCAACAAAGATCAGATGCAGTAAGCAGTTTAGTGTATGAAGCACATGCAAGAGTTAAAGATCCTGTTTATGGTTGTGTTGGAGCCATTTCTTACCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAGATACTATGCATCCAGATGCAACATGATGAGCCTGTAATGCAAAATCCCAATATTGCCCTTGATCAAAAACCTTCTTACCTTCTCCAAAATGATCTTCCTCAATACCTCAACTTTCCATCTTCAAGCAATGTAATTCATTATGATTCTCTCTCAAGAGAGAGCATTTTTTGA 339 0.3894 MLQELPIQQRSDAVSSLVYEAHARVKDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHDEPVMQNPNIALDQKPSYLLQNDLPQYLNFPSSSNVIHYDSLSRESIF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02140 112 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
Trre6g02140 112 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
Trre6g02140 112 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 72 - -
Trre6g02140 112 Coils Coil 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02140 Trre-Chr6 18074636 18075296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02140 1 84 AS2 family AT2G30130 73.256 4.97e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g02140 LOB 6.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02140 - - gmx:121173085 172.94