Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02139 ATGGGTGGTAATACTAATTCCCCTTGTGCTTCATGCAAACTCCTTAGACGCCGTTGTGCTAAGGATTGTATCTTTTCTCCTTATTTCCCTTCAAATGATCCTCAAAAATTTGCTATAGTCCACAAAGTTTTTGGTGCCAGCAACGTTAGCAAAATGCTCCAGGAACTTCCCATTCAACAAAGATCAGATGCAGTAAGCAGTTTAGTGTATGAAGCACATGCAAGAGTTAAAGATCCTGTTTATGGTTGTGTTGGAGCCATTTCTTACCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAGATACTATGCATCCAGATGCAACATGATGAGCCTGTAATGCAAAATCCCAATATTGCCCTTGATCAAAAACCTTCTTACCTTCTCCAAAATGATCTTCCTCAATACCTCAACTTTCCATCTTCAAGCAATGTAATTCATTATGATTCTCTCTCAAGAGAGAGCATTTTTTGA 492 0.3923 MGGNTNSPCASCKLLRRRCAKDCIFSPYFPSNDPQKFAIVHKVFGASNVSKMLQELPIQQRSDAVSSLVYEAHARVKDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHDEPVMQNPNIALDQKPSYLLQNDLPQYLNFPSSSNVIHYDSLSRESIF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02139 163 Coils Coil 87 107 - -
Trre6g02139 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 122 - -
Trre6g02139 163 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Trre6g02139 163 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02139 Trre-Chr6 18074483 18075296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02139 1 135 AS2 family AT2G30130 78.102 2.88e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g02139 LOB 9.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02139 - - gmx:121173085 266.544