Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02125 ATGAAAAGCATGAAGGTTTATGAGCCACGTTCAAGCTCATCTTGTGCAGCTTGCAAGTTACTCAAAAGAAGATGCATACCCAATTGCATATTTGCACCATACTTTCATTCGAACGAGTGCAAGAAATTCGCCAAGGTCCACAAAGTATTTGGAGCAAGTAATGTAAGCAAGATACTCATTGAAGTGCCGGAAAAACAGAGAGAAGACACTGTGAATTCTTTAGCTTATGAAGCTGAGGCAAGGCTTAGAGACCCGGTTTATGGATGCATTGGTTCCATAGCTTTGTTGCAAAGGAAAATGATGGAACTTCAACATGATTTGGCCATTGCTAAGGATCGTCTTGCTCGTTGTCGCGCTGTTGCTGCTGCTACAACCGCCACAACAACTCCTTTTGTTGATAGTTTTCATTCTCATGTTAGTTTGCCTCCATTTCCTGAGTTTTACACTTCTAATGATCTCAATGATATCTTCTGCCATGGCTCTTCTTCGCAATTATCGGGTCAAAATGAAACAGCGGATGATTTCAATCAAATTCCATATATATTTTGA 549 0.4044 MKSMKVYEPRSSSSCAACKLLKRRCIPNCIFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGSIALLQRKMMELQHDLAIAKDRLARCRAVAAATTATTTPFVDSFHSHVSLPPFPEFYTSNDLNDIFCHGSSSQLSGQNETADDFNQIPYIF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02125 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 137 - -
Trre6g02125 182 Coils Coil 93 113 - -
Trre6g02125 182 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Trre6g02125 182 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02125 Trre-Chr6 17975469 17976017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02125 4 181 AS2 family AT3G11090 55.056 8.62e-62 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g02125 LOB 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02125 - - gmx:100305534 288.115