Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02118 ATGTCAAGTTCTAATTCCCGATCATTAAACTGGCACTACACAGAGCTAGACGACAGAGACCTTGAAATCAGAGGCAGAACACTCTTCTTCATAATCGTACTCTTCTCTATTCTCCTTCTCGTTATTGTTCTCTTTTTCTACACTCGCTGGGTTTGCCGCTACCATTCTCACATAACAACCACAACTCTCTCCGCCTCTATTCACGCGCTGCCACCTGCACAACCGCAAGGACTTGACCCTGTTTCAATAAAGAAACTGCCCATTATTCTTCATCAAGCTCCAACTGACCCAGAAAACGGCGCGTGGGAAGACACTGAGTGCTGTATCTGTCTTGGAGAGTTCATAGACGGTGAGAAAGTGAAGGTTTTGCCAGGGTGTGAACATTATTTTCATTGTGATTGTGTTGATAACTGGTTAACTTGTCAATCTAGTTGTCCACTTTGTAGAGGTTCTCTTAAAATTGAATCTTCTTTTCCTGAGATTTTGATTCAAGAACCACCCATTAGAATTGATATCCAATTATAG 525 0.421 MSSSNSRSLNWHYTELDDRDLEIRGRTLFFIIVLFSILLLVIVLFFYTRWVCRYHSHITTTTLSASIHALPPAQPQGLDPVSIKKLPIILHQAPTDPENGAWEDTECCICLGEFIDGEKVKVLPGCEHYFHCDCVDNWLTCQSSCPLCRGSLKIESSFPEILIQEPPIRIDIQL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02118 174 SUPERFAMILY RING/U-box 101 155 - -
Trre6g02118 174 FunFam RING-H2 finger protein ATL66 70 154 - -
Trre6g02118 174 SMART ring_2 107 148 IPR001841 -
Trre6g02118 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 156 - -
Trre6g02118 174 Pfam Ring finger domain 106 149 IPR001841 -
Trre6g02118 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Trre6g02118 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02118 Trre-Chr6 17920427 17920951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02118 9 157 C3H Transcription Factor Family AT3G11110 42.953 2.09e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02118 - - gmx:100794927 267.314