Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02116 ATGAGTATGGAAAACTACAACAATGATTATTCTGAGTGGCACCAACAACAACAGCATAAGCATTGGTCTCAATATAGTACTAGTGATGATCATTCACACTTTCCAACACAAATTCTTCCTCATAATAATATTTCTGATTCTTCTTCTGCTTCTTTTCAATATTCTGAGTTTCAATCATCATGGCCTTTACCTATTGAAGAAAATTTAGAAGATAGAGCAATAAGTGCTTCTAAGAGTCATAGTCAAGCAGAGAAAAGACGCAGAGATAGGATTAATACTCAACTTGCTAATCTTAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAGGCAGCATTACTAGGGAGTGTGATAGATCGAGTCAAAGACCTAAAGCGAAAAGCAATGGATGTTAGCAGAGTCATAACAGTTCCAACTGAAATTGATGAAGTATCAATAGACTATAACCATGTTGAAGATGAAACCAACAATAACAAACTGAACAAATTCAAAAACAATTTCATCATCAAAGCTTCTGTTTGTTGCGACGATCGACCAGAACTGTTCTCTGAACTAATCCAAGTCCTCAAAGGTTTAAGACTTACAACAGTTAAAGCTGACATAGCAAGTGTTGGTGGAAGAATCAAAAGTATATTAATACTTTGTTCTAAGGATAGTGAAGAAAATGTTTGCATTAATACTCTTAAACAATCCCTTAAATCAGCTGTGACAAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACTAGAAGTAAGAGGCAGAGGTTTTTCTTGCCTTCACATTTTGTATAG 795 0.3447 MSMENYNNDYSEWHQQQQHKHWSQYSTSDDHSHFPTQILPHNNISDSSSASFQYSEFQSSWPLPIEENLEDRAISASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDRVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVEDETNNNKLNKFKNNFIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILILCSKDSEENVCINTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02116 264 MobiDBLite consensus disorder prediction 1 42 - -
Trre6g02116 264 CDD ACT_UUR-ACR-like 172 207 - -
Trre6g02116 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 128 IPR036638 GO:0046983
Trre6g02116 264 Pfam Helix-loop-helix DNA-binding domain 78 124 IPR011598 GO:0046983
Trre6g02116 264 CDD bHLH_AtAIG1_like 70 147 - -
Trre6g02116 264 Gene3D - 70 132 IPR036638 GO:0046983
Trre6g02116 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Trre6g02116 264 PANTHER TRANSCRIPTION FACTOR BHLH30 7 260 IPR045847 GO:0003700|GO:0006355
Trre6g02116 264 SMART finulus 81 130 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02116 Trre-Chr6 17892525 17894119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02116 51 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.059 3.69e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g02116 HLH 8.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02116 - - gmx:100799687 347.821