Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02108 ATGTCTTCAATGATTTCTGTTGTTGATGAATTTTCTAAAATTGAAGAAGTTAACTCTGATAAGGCAACTTGGAATTGTAAGGCAAAAATAATAAGACTCTGGGAGGTATCTGATTTCAACCGTAATACTATCCCTTTTTCTATTGAAATGGTTTTAATGGATGCTGATGGTGCTAAGATTCATGCTACTGTAAAAAAAACTCTTATTTACAAATTTAAGGATGAGTTGAAAGAGGGAAAAATTTATGCTTTTGAAAATATGGGAGTTGCAACTAATGGTGGACCCTATCGTTCTACTCAGCACCGTTATAAGTTAAATTTTCAGTTCACATCTATAGTTCAAAGGCTTTGTAACCAAGATATTGTGAAATCTCCCTTTAACTTTACTCCAATTGCTGAAATTCTTGGAGGCTCTTACGACACTGATTTTTTAGTGGATGTGATTGGGTTTTTGACTGGTGTTGGGTGTGAACGTGAAATTACCAACCAACATGGGGTTACATCAAAGCTGAATGTTATTGAGCTAGAGGCTGATGGGCATAAGATACAATGCTCATTGTTTGGGGCTTATGTTGATCTGCTGAATGGTTTTCTTGGAGCTGGAGATGTGCAGAATGTTGTTGTTGTTCTGCAGTTTGCAAAGGCAAAAAAATTTCAAGTTATCGACATGGAATTTGTAGACAACATTCACATACAAAATTGCATGAACTGTACCGTATTGTTATTTAACCCTAGCTGTGAAGAAGCTGTTAGTTTCAAGTCAAGGCAACTTGAAACCAATGAAACTCCAACTCCTGGTACTTTAACTCAAATCAATGTTGAGAGCCAAGTTCAACCCATGGATGAGTTTTTGTTCAACACCCCAAGAAGCACTCTGCAGGCTCTTAAAGAGGCCACTACTGAAAAATTGTTTGTTGTGCTTGGGACTGTCAAAAGGATTTTAAATCCTGACTCCTTTTGGTATACTGCATGTATATGCAACAAGGCTGTCATCCCTGATTCAAGGATGTTTTATTGTGAGAAGTGCAATAAACATGTTTCTAAAGTTTTTCCTAGGTTTTGTATCAAGGTTAGAGTCATGGATGACACGGATTCTGGAACTTTTGTCATATTTGATAGAGATGCAAGTGTGCTTTTCAACATGAGTTGTGCTGATATGATTGAGGGACCGGCAAGGCTTGCTGGAGGTTTGCCTCCTCAAATTGGTGGTATGGTTGACAAAACATGGTTGTTTAAAGTTGAGACCAAACCTTCCTTTAATCCAAGGTTTGAACAATCGTTTCGGGTCAGAAAGATTTGCACGGATGAGGACATCATCAATCAGTTTAAAGAAAAATGGGACAAGGAAGATGCTACTTTTATTAAAAATAGTAATGAGGATGGTTCTTTAAGTACACTCTTGCTGAAAGGGAAAGATTCTTTAGTTGATGGTTCAACTAATTTCTTAGCTGAGGAGTTTGAGACTGGCTCTGGCAGTGATGCTAAAGATAAGGGCCTGATTCTTGAGGGTACACCAGTTGAAGTTTCTCAGGATTTAATGACAAAGTTTTCTTGTGCTGCTGTGAATCTTGGTGATGATTCAAATGATGTTGTTTCAACACCCATTGAGCATAAAGTTTACAAAGGAAAATCTGCTGTTGTAAACCTGGATGAAGTGCAAGTTGCAGCTGTGAAAGGCAAATCTGTTGTCAACTTAGATGAAGTGGAAGATTCAGTTGTGAAAGGCAAATGTGCTATTGTCAACTTAGATAATGAGAAGAGTGACATTGAAAAAGGGAAAAAAGTTGAGGTGAAGGATGTTGTGAATTTAGATCATGATGAGGTTGCTAAGGTGAAGGCTGTCAGTGAAGGAAAAATTGGTGATGAGCCAGCAAAGAAGGTGAAAAAAAAACCAGCTGGCAAGAGAGTTTCACCTACACCACAAGATGAAGATGACAATACTCCCATCAAGCTCTTGAAGAGGGCTATTAAGATTGAAAAAATTGCTTAG 1989 0.3781 MSSMISVVDEFSKIEEVNSDKATWNCKAKIIRLWEVSDFNRNTIPFSIEMVLMDADGAKIHATVKKTLIYKFKDELKEGKIYAFENMGVATNGGPYRSTQHRYKLNFQFTSIVQRLCNQDIVKSPFNFTPIAEILGGSYDTDFLVDVIGFLTGVGCEREITNQHGVTSKLNVIELEADGHKIQCSLFGAYVDLLNGFLGAGDVQNVVVVLQFAKAKKFQVIDMEFVDNIHIQNCMNCTVLLFNPSCEEAVSFKSRQLETNETPTPGTLTQINVESQVQPMDEFLFNTPRSTLQALKEATTEKLFVVLGTVKRILNPDSFWYTACICNKAVIPDSRMFYCEKCNKHVSKVFPRFCIKVRVMDDTDSGTFVIFDRDASVLFNMSCADMIEGPARLAGGLPPQIGGMVDKTWLFKVETKPSFNPRFEQSFRVRKICTDEDIINQFKEKWDKEDATFIKNSNEDGSLSTLLLKGKDSLVDGSTNFLAEEFETGSGSDAKDKGLILEGTPVEVSQDLMTKFSCAAVNLGDDSNDVVSTPIEHKVYKGKSAVVNLDEVQVAAVKGKSVVNLDEVEDSVVKGKCAIVNLDNEKSDIEKGKKVEVKDVVNLDHDEVAKVKAVSEGKIGDEPAKKVKKKPAGKRVSPTPQDEDDNTPIKLLKRAIKIEKIA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02108 662 CDD RPA1_DBD_C 290 432 IPR047192 -
Trre6g02108 662 CDD RPA1_DBD_B_like 146 256 - -
Trre6g02108 662 Gene3D - 9 115 IPR012340 -
Trre6g02108 662 PANTHER OS03G0429900 PROTEIN 10 416 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre6g02108 662 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre6g02108 662 SUPERFAMILY Nucleic acid-binding proteins 10 116 IPR012340 -
Trre6g02108 662 SUPERFAMILY Nucleic acid-binding proteins 126 255 IPR012340 -
Trre6g02108 662 Pfam Replication factor-A C terminal domain 306 388 IPR013955 -
Trre6g02108 662 SUPERFAMILY Nucleic acid-binding proteins 289 432 IPR012340 -
Trre6g02108 662 CDD RPA1_DBD_A_like 27 113 - -
Trre6g02108 662 MobiDBLite consensus disorder prediction 620 648 - -
Trre6g02108 662 Gene3D - 119 263 IPR012340 -
Trre6g02108 662 Gene3D - 284 443 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02108 Trre-Chr6 17834727 17837555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02108 46 386 Core DNA Replication Machinery Family AT5G08020 24.302 9.53e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02108 - - tpra:123915358 764.222