Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02107 ATGTCTTCAATGATTTCTGTTGTTGATGAATTTTCTAAAATTGAAGAAGTTAACTCTGATAAGGCAACTTGGAATTGTAAGGCAAAAATAATAAGACTCTGGGAGGTATCTGATTTCAACCGTAATACTATCCCTTTTTCTATTGAAATGGTTTTAATGGATGCTGATGGTGCTAAGATTCATGCTACTGTAAAAAAAACTCTTATTTACAAATTTAAGGATGAGTTGAAAGAGGGAAAAATTTATGCTTTTGAAAATATGGGAGTTGCAACTAATGGTGGACCCTATCGTTCTACTCAGCACCGTTATAAGTTAAATTTTCAGTTCACATCTATAGTTCAAAGGCTTTGTAACCAAGATATTGTGAAATCTCCCTTTAACTTTACTCCAATTGCTGAAATTCTTGGAGGCTCTTACGACACTGATTTTTTAGTGGATGTGATTGGGTTTTTGACTGGTGTTGGGTGTGAACGTGAAATTACCAACCAACATGGGGTTACATCAAAGCTGAATGTTATTGAGCTAGAGGCTGATGGGCATAAGATACAATGCTCATTGTTTGGGGCTTATGTTGATCTGCTGAATGGTTTTCTTGGAGCTGGAGATGTGCAGAATGTTGTTGTTGTTCTGCAGTTTGCAAAGGCAAAAAAATTTCAAGACAACATTCACATACAAAATTGCATGAACTGTACCGTATTGTTATTTAACCCTAGCTGTGAAGAAGCTGTTAGTTTCAAGTCAAGGCAACTTGAAACCAATGAAACTCCAACTCCTGGTACTTTAACTCAAATCAATGTTGAGAGCCAAGTTCAACCCATGGATGAGTTTTTGTTCAACACCCCAAGAAGCACTCTGCAGGCTCTTAAAGAGGCCACTACTGAAAAATTGTTTGTTGTGCTTGGGACTGTCAAAAGGATTTTAAATCCTGACTCCTTTTGGTATACTGCATGTATATGCAACAAGGCTGTCATCCCTGATTCAAGGATGTTTTATTGTGAGAAGTGCAATAAACATGTTTCTAAAGTTTTTCCTAGGTTTTGTATCAAGGTTAGAGTCATGGATGACACGGATTCTGGAACTTTTGTCATATTTGATAGAGATGCAAGTGTGCTTTTCAACATGAGTTGTGCTGATATGATTGAGGGACCGGCAAGGCTTGCTGGAGGTTTGCCTCCTCAAATTGGTGGTATGGTTGACAAAACATGGTTGTTTAAAGTTGAGACCAAACCTTCCTTTAATCCAAGGTTTGAACAATCGTTTCGGGTCAGAAAGATTTGCACGGATGAGGACATCATCAATCAGTTTAAAGAAAAATGGGACAAGGAAGATGCTACTTTTATTAAAAATAGTAATGAGGATGGTTCTTTAAGTACACTCTTGCTGAAAGGGAAAGATTCTTTAGTTGATGGTTCAACTAATTTCTTAGCTGAGGAGTTTGAGACTGGCTCTGGCAGTGATGCTAAAGATAAGGGCCTGATTCTTGAGGGTACACCAGTTGAAGTTTCTCAGGATTTAATGACAAAGTTTTCTTGTGCTGCTGTGAATCTTGGTGATGATTCAAATGATGTTGTTTCAACACCCATTGAGCATAAAGTTTACAAAGGAAAATCTGCTGTTGTAAACCTGGATGAAGTGCAAGTTGCAGCTGTGAAAGGCAAATCTGTTGTCAACTTAGATGAAGTGGAAGATTCAGTTGTGAAAGGCAAATGTGCTATTGTCAACTTAGATAATGAGAAGAGTGACATTGAAAAAGGGAAAAAAGTTGAGGTGAAGGATGTTGTGAATTTAGATCATGATGAGGTTGCTAAGGTGAAGGCTGTCAGTGAAGGAAAAATTGGTGATGAGCCAGCAAAGAAGGTGAAAAAAAAACCAGCTGGCAAGAGAGTTTCACCTACACCACAAGATGAAGATGACAATACTCCCATCAAGCTCTTGAAGAGGGCTATTAAGATTGAAAAAATTGCTTAG 1968 0.3786 MSSMISVVDEFSKIEEVNSDKATWNCKAKIIRLWEVSDFNRNTIPFSIEMVLMDADGAKIHATVKKTLIYKFKDELKEGKIYAFENMGVATNGGPYRSTQHRYKLNFQFTSIVQRLCNQDIVKSPFNFTPIAEILGGSYDTDFLVDVIGFLTGVGCEREITNQHGVTSKLNVIELEADGHKIQCSLFGAYVDLLNGFLGAGDVQNVVVVLQFAKAKKFQDNIHIQNCMNCTVLLFNPSCEEAVSFKSRQLETNETPTPGTLTQINVESQVQPMDEFLFNTPRSTLQALKEATTEKLFVVLGTVKRILNPDSFWYTACICNKAVIPDSRMFYCEKCNKHVSKVFPRFCIKVRVMDDTDSGTFVIFDRDASVLFNMSCADMIEGPARLAGGLPPQIGGMVDKTWLFKVETKPSFNPRFEQSFRVRKICTDEDIINQFKEKWDKEDATFIKNSNEDGSLSTLLLKGKDSLVDGSTNFLAEEFETGSGSDAKDKGLILEGTPVEVSQDLMTKFSCAAVNLGDDSNDVVSTPIEHKVYKGKSAVVNLDEVQVAAVKGKSVVNLDEVEDSVVKGKCAIVNLDNEKSDIEKGKKVEVKDVVNLDHDEVAKVKAVSEGKIGDEPAKKVKKKPAGKRVSPTPQDEDDNTPIKLLKRAIKIEKIA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02107 655 PANTHER OS03G0429900 PROTEIN 10 410 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre6g02107 655 Pfam Replication factor-A C terminal domain 299 381 IPR013955 -
Trre6g02107 655 Gene3D - 9 115 IPR012340 -
Trre6g02107 655 CDD RPA1_DBD_C 283 425 IPR047192 -
Trre6g02107 655 SUPERFAMILY Nucleic acid-binding proteins 126 248 IPR012340 -
Trre6g02107 655 SUPERFAMILY Nucleic acid-binding proteins 10 116 IPR012340 -
Trre6g02107 655 MobiDBLite consensus disorder prediction 613 641 - -
Trre6g02107 655 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre6g02107 655 CDD RPA1_DBD_B_like 146 249 - -
Trre6g02107 655 CDD RPA1_DBD_A_like 27 113 - -
Trre6g02107 655 Gene3D - 277 436 IPR012340 -
Trre6g02107 655 Gene3D - 119 256 IPR012340 -
Trre6g02107 655 SUPERFAMILY Nucleic acid-binding proteins 282 425 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02107 Trre-Chr6 17834727 17837555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02107 46 379 Core DNA Replication Machinery Family AT5G08020 25.071 1.28e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02107 - - tpra:123915358 771.155