Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02102 ATGGTAAACAACTTCAAATTAACCTCAGTTTTACTTGAATTATCAGCAACAGATGATATTGAAGCTTTCAAAAGGGAAGTGGAACAAAAGGGTTGTGATGTAAATGAAGCTGGATTTTGGTATTGTAGAAAATTAGGATCTAAGAAGATGTGTTATGAAAAGAGAACACCTCTTATGGTTGCTTCTTTGTTTGGAAGCAAAAGGGTTGTCAAATATATCATTCAATCAAACATGGTTGATGTAAGCATGCCAATTGGTTGTGAAAATGTCACTGCTTTACATTGTGCTGTTTCCGGTGGCTCTGAATCAACTCTTGAGATTGTTAAGCTCTTGGTTGATGCTGGAGCTGATGTTGATTGTCTCGATGAGATAATTAAGCAGAAATTTTCAGTGCTTAATTCAAAAGAATTGTTAGAGAGTGAGAAGAAAGAGTATCCTGTTGATATATCATTGCCTGATATAAATAGCGGTGCTTTCGGAACAGATGAGTTTAGAATGTATAGTTTCAAGGTGAAGACTTGTTCAAGGGGTTACTCTCATGATTGGACTGTGTGTCCATTTGTTCATCCAGGGGAGAATGCTAGAAGGAGAGACCCAAGGAAGTATCCTTATAGCTGTGTTCCGTGTCCGGAGTTTCGCAAAGGGACATGCCAGAAGAAAGATGCCTGTGAGTATTCACATGGTGTCTTTGAGTCTTTGCTTCATCCTTCACAATACAGAACAAGACTTTGTAAAGATGAGATTAGGTGTTCTAGAAAAGTGTGTTTCTTTGCACATAAACCTGAAGAGTTGCGCCCTTTGTTTGCTTCTACCGGATCAGCTTTGCCTTCACAAGAATCCATACCAGTTTCAAATGTTTCAACACCAGTTATGTCTCCCTTGGTAGGTGGTTCCTCTCCTAAGAGTGGAAACTTGTGGCAGAATAAAGTCAATCAATCTCCACCTTCATTACAACTTCCACGTAGCCACCAGCTGAAAAATACTCTGAGTGCAAAGGATTTGTATCAGGAAATGGCACTTCTTGGTATAGAAAGAGCTACTAGTCAACAACAACAGCAACAACAGTTGATTGAAGAAATTCTTTCAATGCAACCTTCAACTCCTACTCAATTTCAATCAATGAGTAGGCTTCAGTTTAACCAAAACAGGAACAATGTTCAAGCAAGTTATCCATTCAACAACACTGTTTCCTCTCCTATGAGAAAATCACCACCATTTGGATTTGACTCATCAGCTGCAGTGGCTACAGCAGTGATGAATTCAAGATCATCAGCCTTTGCAACACGAAGCCAAAGTTTTATGGATCGCGGTGCGGCAAGACACCATCTTGGTGCTTCCAACCCCAATGGGAGGATGAACTCTGAACAATGGAATGATGTGAACAAGTTCCAAAAATCTGTTTCTTTTGGGTCTAGACATAATGGAGTAGCTGCCTCACCCTTGGCACGACAGCCAGAATATGCAGAACCGGATATCTCGTGGGTTCATTCGCTTGTTAAAGATGTTTCTTCTGAGAGTTCTGAGATGTTTGGTGTTGAGAAGCAACGTTATGATCTCTATAAACAAATGTTATCACCATGGGCAGAGCAGATTGTAGCATAA 1602 0.4007 MVNNFKLTSVLLELSATDDIEAFKREVEQKGCDVNEAGFWYCRKLGSKKMCYEKRTPLMVASLFGSKRVVKYIIQSNMVDVSMPIGCENVTALHCAVSGGSESTLEIVKLLVDAGADVDCLDEIIKQKFSVLNSKELLESEKKEYPVDISLPDINSGAFGTDEFRMYSFKVKTCSRGYSHDWTVCPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYSHGVFESLLHPSQYRTRLCKDEIRCSRKVCFFAHKPEELRPLFASTGSALPSQESIPVSNVSTPVMSPLVGGSSPKSGNLWQNKVNQSPPSLQLPRSHQLKNTLSAKDLYQEMALLGIERATSQQQQQQQLIEEILSMQPSTPTQFQSMSRLQFNQNRNNVQASYPFNNTVSSPMRKSPPFGFDSSAAVATAVMNSRSSAFATRSQSFMDRGAARHHLGASNPNGRMNSEQWNDVNKFQKSVSFGSRHNGVAASPLARQPEYAEPDISWVHSLVKDVSSESSEMFGVEKQRYDLYKQMLSPWAEQIVA 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02102 533 MobiDBLite consensus disorder prediction 295 319 - -
Trre6g02102 533 ProSiteProfiles Ankyrin repeat region circular profile. 88 123 - -
Trre6g02102 533 SUPERFAMILY Ankyrin repeat 9 123 IPR036770 -
Trre6g02102 533 SMART ANK_2a 88 120 IPR002110 GO:0005515
Trre6g02102 533 SMART ANK_2a 53 83 IPR002110 GO:0005515
Trre6g02102 533 ProSiteProfiles Ankyrin repeat profile. 88 123 IPR002110 GO:0005515
Trre6g02102 533 PANTHER UNKEMPT FAMILY MEMBER 13 501 IPR045234 -
Trre6g02102 533 SMART c3hfinal6 238 261 IPR000571 GO:0046872
Trre6g02102 533 SMART c3hfinal6 203 229 IPR000571 GO:0046872
Trre6g02102 533 Pfam Ankyrin repeats (3 copies) 30 120 IPR002110 GO:0005515
Trre6g02102 533 Gene3D - 3 148 IPR036770 -
Trre6g02102 533 Gene3D - 204 266 - -
Trre6g02102 533 FunFam Zinc finger CCCH domain-containing protein 66 161 229 - -
Trre6g02102 533 ProSiteProfiles Zinc finger C3H1-type profile. 203 230 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02102 Trre-Chr6 17817207 17818808 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02102 9 337 C2H2 Transcription Factor Family AT5G12850 42.721 8.45e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g02102 Ank_2 5.3e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02102 - - tpra:123894788 971.844