Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02100 ATGGAAAATAAGTTCCAAACCTCAGTTTTACTTGAGTTATCAGCAACTGATGATGTTGAAGCTTTCAAAAAGGAAGTGGAAGAAAAGGGTTGTGATGTAAATGAAGCTGGATTTTGGTATTGTAGAAAATTAGGATCTAAAATGATGTGTTATGAAAAGAGAACACCTCTTATGGTTGCTTCTTTGTTTGGAAGTAAAAGGGTTGTCAAATATATCATTCAATCAAACATGGTTGATGTAAGCATGCCAATTGGTTGTGAAAATGTCACTGCTTTACATTGTGCCGTTTCCGGTGGCTCTGAATCAACTCTTGAAATTGTTAAGCTCTTGGTTGATGCTGGAGCAGATATTGATTGTCTTGATGAGATAATTAAGCAGAAATTTTCAGTGCTTAATTCAAAAGAATTGTTAGAAAGTGAGAAGAAAGAGTATCCTGTTGATATATCATTGCCTGATATAAATAGCGGTGCTTTCGGAACAGATGAGTTTAGAATGTATAGTTTCAAGGTGAAGACTTGTTCAAGGGGTTACTCTCATGATTGGACTGTGTGCCCATTTGTTCATCCAGGGGAGAATGCTAGAAGGAGAGACCCAAGGAAGTATCCTTATAGCTGTGTTCCGTGTCCCGAGTTTCGCAAAGGGACATGCCAGAAGAAAGATGCATGTGAGTATTCACATGGTGTCTTTGAGTCTTTGCTTCATCCTTCACAATACAAAACAAGGCTTTGTAAAGATGAGCTTAAGTGTTCTAGGAAAGTGTGTTTCTTTGCACATAAACCTGAAGAGTTACGCCCTTTGTATGCTTCTACTGGTTCGGCAATGCCTTCACAAGAATCCTTATCGGTTTCAAATGTTTCAACACCAGTTATGTCTCCCTTGGTGGCTGGTTCGTTTCCTAAGAGTGGAAACTTGTGGCAGAATAAAATCAATCAATCTCCACCTTCATTGCAACTTCCATATAGTCACCAGTTGAAAAGTACTTCGAGTACAAAGGATTTGTATCTAGAAATGGCACTTCTTGATATAGAAAGAGCTACTAGTCGTCAACAACAACAGCAGTTGATGGAAGAAATTCTTTCAATGCAACCTTCAACTCCTACTCAATTTCAATCCATCAGTAGGCTTCAGATGAACCAAAATAGGAACACTGTTCAAGCAAGTTATCCATTCAACAACATAAAATCATCACCATTTGGATTTGAATCATCAGGTGCAGTGGCTACAGCAGTGATGAACTCAAGATCATCAGCCTTTGCGACACGAAGCCAAAGTTTTATGGATCGCGGTGTGGCAAGACACCATCTTGGTGCTTCCAAACCCAATGGCAGAATGAACTCTGAACAATGGGATGATGTGAACAAGTTCCAAAAATCTGTTTCTTTTGGGTCTAGACATAACGGGGTAGCTGCCTCACCCTTGGCACGACAGCCAGAATATGTTGAACCTGATATCTCGTGGGTTCATTCGCTTGTCAAAGACGTTTCTTCTGAGAGTTCTGAGATGTTTGGTGCTGAGAAGCAACATTATGATCTCTATAAACAAATGTTATCACCATGGACAGAGCAGATTGTAGCATAA 1578 0.3961 MENKFQTSVLLELSATDDVEAFKKEVEEKGCDVNEAGFWYCRKLGSKMMCYEKRTPLMVASLFGSKRVVKYIIQSNMVDVSMPIGCENVTALHCAVSGGSESTLEIVKLLVDAGADIDCLDEIIKQKFSVLNSKELLESEKKEYPVDISLPDINSGAFGTDEFRMYSFKVKTCSRGYSHDWTVCPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYSHGVFESLLHPSQYKTRLCKDELKCSRKVCFFAHKPEELRPLYASTGSAMPSQESLSVSNVSTPVMSPLVAGSFPKSGNLWQNKINQSPPSLQLPYSHQLKSTSSTKDLYLEMALLDIERATSRQQQQQLMEEILSMQPSTPTQFQSISRLQMNQNRNTVQASYPFNNIKSSPFGFESSGAVATAVMNSRSSAFATRSQSFMDRGVARHHLGASKPNGRMNSEQWDDVNKFQKSVSFGSRHNGVAASPLARQPEYVEPDISWVHSLVKDVSSESSEMFGAEKQHYDLYKQMLSPWTEQIVA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02100 525 Gene3D - 203 265 - -
Trre6g02100 525 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Trre6g02100 525 SMART ANK_2a 87 119 IPR002110 GO:0005515
Trre6g02100 525 SMART ANK_2a 52 82 IPR002110 GO:0005515
Trre6g02100 525 PANTHER UNKEMPT FAMILY MEMBER 12 493 IPR045234 -
Trre6g02100 525 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Trre6g02100 525 ProSiteProfiles Zinc finger C3H1-type profile. 202 229 IPR000571 GO:0046872
Trre6g02100 525 SMART c3hfinal6 202 228 IPR000571 GO:0046872
Trre6g02100 525 SMART c3hfinal6 237 260 IPR000571 GO:0046872
Trre6g02100 525 Gene3D - 1 147 IPR036770 -
Trre6g02100 525 Pfam Ankyrin repeats (3 copies) 26 119 IPR002110 GO:0005515
Trre6g02100 525 SUPERFAMILY Ankyrin repeat 4 122 IPR036770 -
Trre6g02100 525 FunFam Zinc finger CCCH domain-containing protein 66 160 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02100 Trre-Chr6 17807374 17808951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02100 139 496 C2H2 Transcription Factor Family AT5G12850 38.303 1.67e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g02100 Ank_2 3.3e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02100 - - tpra:123894788 972.615