Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02092 ATGGCGTCATCAAACCACCGCCCACCACCGCCACATCCATTTTCCGACTCAGATTCCGACGGCGATTCCTCCACCTCTACACTCCTCCGTCATTCAGACCTCTCCGAATCCATATTCAAATCCTACTTCAATTTTTCCGGCCACTCCTCAACCAATGCAACCTCCGCCGACCTCTCTAAGATCCAATCATTCCTCACCTCCTCTTCCTCCGGCGCTCTTTCCTGCCTCATTTGTCTCGAACGCATCAAACCTTCCGATCCCACATGGTCCTGCACCTCCCTCTGCTTCGCCGTCTTCCATCTCTTCTGCATTCAAAGCTGGTCCCGTCAAGCTTCCGATCTCGCCGCCGCACGTGCCGTCACTCGTCTCTCCATTTCTCCCGATCAAGCCTCTGATACATCTCTCTGGAATTGCCCCAAATGTAGAGTTGAATATCCCAAAAGCTTAATCCCAAAAACCTATCTCTGTTTCTGTGGAAAATTGGAGAATCCTCCAAGTGATGATCCTTGGGTTTTACCTCATTCTTGTGGTGAAGTTTGTGGTAGATCTTTGAAGAACAATTGTGGCCACCATTGTTTGCTTTTATGCCATCCTGGGCCATGTCCATCTTGTCCACAACTTGTTAAAGTTCGTTGCTTTTGTGGGTCTAATCAAGACGTTCGAAGATGTGGGTTCAAGGAGTTTTCTTGTGAATCTCCTTGTTCAAAGTTATTAGATTGTGGTGTTCATAGGTGTGTTGAGATTTGCCACCGTGGCACGTGTCCGCCGTGTCGGGCACGTGGTGTTTATAGGTGTCAATGTGGGAAGGTGAAAGACGAGAGGGAGTGTTGTGATCGTGTTTTTCGATGTGATGATCCTTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTGAGAGAGGGTGTCATTCTGGTGAATGTGGTGAATGTCCTTTACAAGGGAAGAGAACATGTCCTTGTGGAAAAAGGGTATATGAAGGAATGCCTTGTGATGCTCCTATGCAGGTTTGTGGAGCTACTTGTGATAAAATGTTACCGTGTGGATATCATAGGTGTCATGAACGATGCCACCGCGGACAATGTATGGAGACTTGTAGGATTGTTGTGAGGAAATGTTGTCGCTGTGGTAGCCTCAAGAAAGATGTACCTTGCTATCAAGATTTGGTATGTGAGAGGAAGTGTCAGACGTTGCGCGATTGTGGTAGGCATCCCTGTAAACGCCGCTGCTGTGATGGAGATTGCCCTCCGTGCTCAGAGATATGTGGCAAGAGGCTTCGCTGTAGGAACCATAAGTGCCAATCTCCATGCCATAGAGGTCCCTGTGCTCCTTGTCCTATTATGGTGACAATTTCGTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCCAAATGTCGTAAACAATGTCCAATTAAGCCTTTGTGCCGGCATGCATTAATCTGCAAGCCACACAAATGCCATTATGGAGCCTGCCCTCCATGTCGCCTACCTTGTGCAGAAGAGTACCAATGTGGCCATGCATGCAAATTAAGGTGTCATGGTGCAAGGCCTCCTCCAAATCTAGAATTTACTCTCAAACCAAAGAAAAAGAAGAATACACAACAAAGTGAAAGTGTTCCTGGCACTCCATGCCCTCCTTGCCCGGAACTAGAATGGAGACCATGTGTAGGGCAGCACATTGGAGCAGAGCGAATGATGGTCTGCTCTGATAAATCACGGTTCTCCTGTGAGAATTTATGTGGTAATCCTTTACCGTGTGGTAATCATTATTGTACTAAAACCTGCCATCCCTTGGAGAACCGGTCTTCCACGAACCAGTCACTAAGAAGTGAGGCTTGTGAAGATTGTTCGCTTTCTTGTCAAAAGGAAAGGAAGCCTAAGTGTCAACATCACTGTCCTCGACGATGCCATCCTGGAGATTGCCCCCCATGCAAGGTGCTAGTTAAACGGTCATGTCATTGTGGTGCAATGGTCCATGCTTTTGAGTGCATTTATTACAACAGCCTGTCTGCAAAGGATCAAGAGACTGCTCGGTCATGTGGTGGACCATGCCATAGAAAGATGCCAAATTGTTCACATCTATGCCCAGAGACATGTCATCCTGGTGAATGCCCAAATCCTGATAAATGCGGTAAAAAGGTCACTGTTCGCTGCAAATGCCAAACACTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCACATAATCGTGCCGGTTCCCATCCAAGTGAAATACCAAAAAATCAATTTGGAGTTGGACTTATTCCTTGCAATTCTGACTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTGCAATTACGGAAATCTAGAGTTACCGAGGTAAAGGAGCCAGATAATGAAAAATCAGTTCCAAAGCGACGAAAAAGGCGGGAGCGGGTAGTAGAATCCAATGAACCGACAATACTACAGAAAATAATTTCCAGAACAAAGCAGGTTCTTCTATTTATCTTTTTCTTAGTCATACTTGTTGCCACTACTCATTATGGATACAAGGGACTACTACAGCTCAATGATTGGATGAATAAAGTTGACGAGCAGAGACATAGATCTTCGCGAATCAGATGA 2619 0.4605 MASSNHRPPPPHPFSDSDSDGDSSTSTLLRHSDLSESIFKSYFNFSGHSSTNATSADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRQASDLAAARAVTRLSISPDQASDTSLWNCPKCRVEYPKSLIPKTYLCFCGKLENPPSDDPWVLPHSCGEVCGRSLKNNCGHHCLLLCHPGPCPSCPQLVKVRCFCGSNQDVRRCGFKEFSCESPCSKLLDCGVHRCVEICHRGTCPPCRARGVYRCQCGKVKDERECCDRVFRCDDPCEKKLSCGKHVCERGCHSGECGECPLQGKRTCPCGKRVYEGMPCDAPMQVCGATCDKMLPCGYHRCHERCHRGQCMETCRIVVRKCCRCGSLKKDVPCYQDLVCERKCQTLRDCGRHPCKRRCCDGDCPPCSEICGKRLRCRNHKCQSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPKCRKQCPIKPLCRHALICKPHKCHYGACPPCRLPCAEEYQCGHACKLRCHGARPPPNLEFTLKPKKKKNTQQSESVPGTPCPPCPELEWRPCVGQHIGAERMMVCSDKSRFSCENLCGNPLPCGNHYCTKTCHPLENRSSTNQSLRSEACEDCSLSCQKERKPKCQHHCPRRCHPGDCPPCKVLVKRSCHCGAMVHAFECIYYNSLSAKDQETARSCGGPCHRKMPNCSHLCPETCHPGECPNPDKCGKKVTVRCKCQTLKKEWLCQDVQAAHNRAGSHPSEIPKNQFGVGLIPCNSDCKSKVQVVESELQLRKSRVTEVKEPDNEKSVPKRRKRRERVVESNEPTILQKIISRTKQVLLFIFFLVILVATTHYGYKGLLQLNDWMNKVDEQRHRSSRIR 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02092 872 MobiDBLite consensus disorder prediction 1 15 - -
Trre6g02092 872 SMART znfxneu3 637 655 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 513 558 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 595 627 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 240 259 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 400 419 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 700 729 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 293 312 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 427 446 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 188 206 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 490 505 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 SMART znfxneu3 347 367 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 CDD NF-X1-zinc-finger 176 224 - -
Trre6g02092 872 MobiDBLite consensus disorder prediction 789 812 - -
Trre6g02092 872 CDD RING-CH-C4HC3_NFXL1 73 142 - -
Trre6g02092 872 CDD NF-X1-zinc-finger 337 386 - -
Trre6g02092 872 MobiDBLite consensus disorder prediction 532 552 - -
Trre6g02092 872 Pfam NF-X1 type zinc finger 700 714 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 Pfam NF-X1 type zinc finger 595 606 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 Pfam NF-X1 type zinc finger 400 418 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 Pfam NF-X1 type zinc finger 347 366 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 Pfam NF-X1 type zinc finger 240 258 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 Pfam NF-X1 type zinc finger 421 445 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 Pfam NF-X1 type zinc finger 494 504 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 Pfam NF-X1 type zinc finger 293 311 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 Pfam NF-X1 type zinc finger 638 654 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 Pfam NF-X1 type zinc finger 188 205 IPR000967 GO:0005634|GO:0008270
Trre6g02092 872 CDD NF-X1-zinc-finger 390 438 - -
Trre6g02092 872 CDD NF-X1-zinc-finger 283 330 - -
Trre6g02092 872 MobiDBLite consensus disorder prediction 1 28 - -
Trre6g02092 872 Coils Coil 871 872 - -
Trre6g02092 872 CDD NF-X1-zinc-finger 637 666 - -
Trre6g02092 872 CDD NF-X1-zinc-finger 417 465 - -
Trre6g02092 872 CDD NF-X1-zinc-finger 230 278 - -
Trre6g02092 872 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 48 522 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02092 Trre-Chr6 17702099 17708024 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Trre6g02092 zf-NF-X1 0.00029 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02092 K15683 - gmx:100799540 1565.44