Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02085 ATGGCTTTCAGAGCCAGTGGAACACTGATTTTAGCTTGTCTCATTTGGATTTTCTTCCTCTGTGCAACAATTGCATTCTTTCAGCTCAAATTGGTTGAAAACAGAACAACCCATCAAGCTTCTTCTCATGATAAATTAACCACAACTCAAAATCATCATCACTCAGATACCCTTTTGGAAGATGATTTGGAGGGTGTGACTCATAAAGTCTATTTTGATGTTGAGATCGATGGAAAATTAGCTGGTCGCATAGTGATGGGCCTTTTTGGGACCACAGTACCGAAAACTGCAGAAAACTTCCGTGCGCTTTGTACAGGAGAGAAAGGGGTAGGAAGAAGTGGAAAGCCTCTTCATTATAAAGGGAGCGCATTCCATAGGATAATACCAAGCTTCATGGTCCAAGGGGGTGATTTCACCATTGGTGATGGAAGCGGTGGAGAATCAATCTATGGCGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATACTGGGCCAGGATACTTATCGATGGCAAATTCCGGGCAAGACACCAATGGCTCCCAGTTTTTCATAACAACAGTAAAAACCAGCTGGCTTGATGGACGCCATGTTGTATTCGGCAAAGTGCTTTCTGGTATGGATGTTTTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCTCCCAAACGTAAGGTTATGATATTAGACAGTGGGGAATTAACTTCATAA 714 0.423 MAFRASGTLILACLIWIFFLCATIAFFQLKLVENRTTHQASSHDKLTTTQNHHHSDTLLEDDLEGVTHKVYFDVEIDGKLAGRIVMGLFGTTVPKTAENFRALCTGEKGVGRSGKPLHYKGSAFHRIIPSFMVQGGDFTIGDGSGGESIYGDKFADENFKLKHTGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKRKVMILDSGELTS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02085 237 FunFam Peptidyl-prolyl cis-trans isomerase 64 236 - -
Trre6g02085 237 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 69 235 - -
Trre6g02085 237 CDD cyclophilin_ABH_like 68 233 - -
Trre6g02085 237 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 71 234 IPR002130 GO:0000413|GO:0003755
Trre6g02085 237 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 72 231 IPR002130 GO:0000413|GO:0003755
Trre6g02085 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 194 IPR002130 GO:0000413|GO:0003755
Trre6g02085 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 195 210 IPR002130 GO:0000413|GO:0003755
Trre6g02085 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 167 182 IPR002130 GO:0000413|GO:0003755
Trre6g02085 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 136 IPR002130 GO:0000413|GO:0003755
Trre6g02085 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 103 IPR002130 GO:0000413|GO:0003755
Trre6g02085 237 Gene3D - 58 237 IPR029000 -
Trre6g02085 237 SUPERFAMILY Cyclophilin-like 66 235 IPR029000 -
Trre6g02085 237 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 119 136 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02085 Trre-Chr6 17674629 17677611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02085 82 232 U-box Gene Family AT5G67530 43.791 1.05e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02085 K01802 - gmx:100792649 395.971