Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02071 ATGGCCACCACAACCACCGCCGCCACGTCACACTTTTTCGGCACTCGCCTCTGCAACAAACCAACCTCAAACATGGGAAGAGTCCGCGCATTCTTTAACCTCCCCGGCAAATTAAAACCACAACCAAAGAAAAAGGAAGTAAAAAAAGTGAGACAACCGGAAAGTGACGGACTCGTGTGGTTTCCTGGTGCACAGCCACCGGAATGGCTCGACGGAACAATGATCGGTGACCGTGGATTTGATCCATTGGGATTCGCGAAACCCGCAGAGTATTTACAGTTTGAACTTGACTCACTTGATCAGAATCTGGCTAAGAACCTTGCCGGTGATATAATTGGAACCAGGTTGGAAAGTACGGAGGTTAACCCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGGATTCAGAGGTTTCGTGAGTGTGAAGTTATTCATGGAAGGTGGGCCATGCTTGGTGCTCTTGGTGCTTTGGCTGTTGAAGCTTTCACTGGTGTCGCATGGCAAGATGCTGGAAAGGTAGAGCTTGTAGAAGGTTCATCCTACTTTGGATTACCACTTCCATTCTCAATTAGCACATTGATATGGATTGAAGTATTAGTAATTGGGTACATTGAGTTTCAAAGGAATGCAGAGCTTGACCCAGAGAAAAGGTTATACCCTGGTGGAAAATTCTTTGATCCTCTTGGTTTGGCCAGTGATCCTGAAGAGAAAGAAAGACTTCAACTTGCAGAGATTAAGCATTCTCGTTTGGCTATGATTGTCTTCCTCATCTTTGCAATTCAAGCTGCTGTTACAGGAAAAGGACCTATTGGTTTCATTGCTACCTTCAACCAGTGA 837 0.4612 MATTTTAATSHFFGTRLCNKPTSNMGRVRAFFNLPGKLKPQPKKKEVKKVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFELDSLDQNLAKNLAGDIIGTRLESTEVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGLPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEEKERLQLAEIKHSRLAMIVFLIFAIQAAVTGKGPIGFIATFNQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02071 278 SUPERFAMILY Chlorophyll a-b binding protein 55 275 - -
Trre6g02071 278 Gene3D Chlorophyll a/b binding protein domain 57 278 - -
Trre6g02071 278 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 19 274 IPR001344 GO:0009765|GO:0016020
Trre6g02071 278 Pfam Chlorophyll A-B binding protein 66 262 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02071 Trre-Chr6 17542547 17545182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02071 13 275 Chloroplast and Mitochondria Gene Families AT3G08940 68.821 1.20e-129 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02071 K08915 - gmx:100820335 445.662