Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02052 ATGTTGGATTTGAATGATTTGTGCTGGAAAGAAGAAGGGAAGGTTTGGATTCCGAAAGGGGTCCCAACATTCGATTGGGACGATTACAAGTGCGTCGAAGAGTTGGGCAGAAGTGGGAGAGGATTTTCTTACAAGGTTCAACAAATTTCGACGGGGAAGTTCTTTGCCATCAAAAAGGTTTTGATATATGCGGATGAGGAAGATGATCAAGACCACAAGGAACGTATTATGTATGATATGACTCTAGCTACATCTATTGATCATCCCAATATTATGAAATGTCTAGGTGTGTGTATGAATCAATGTGGTGTTCATTTTCTCTATAATTGGATGCCTGACCATTTGTGTAGTAATCGTGGTATATTACGAGATGATGAGTCACATCTTGCTCAAATAGCATATCAGGTTTTGAAAGGGTTAAATTATTTGAGAAACGAAAAGGGTTTCGTGTTTAGGCATCTCACCCCGGGCAATTTATTGTTCGATCTATCCTGCTCCTTAGTTAAGATTGCTGATGTTGGGACTGTTAAGGATAGGTATATTTCATTAAATTGGCTTCCTATCCGTTCATGCTATATGAAGTACATTGCCCCGGAGAATTTTCACATAGAAGATATTGATGGTGATGAAGAACAAGACCGTACCCTGCAATCAGATCGATACACTAAAAGCGATGTCTGGAGTTTGGGACTTTGTTTACTGGAATTTTATCATGGGACATTCCCGTTTCATGGTAACGATACAGAGCTTCTGAGGTATCTGTTATCAGGTCTTGATCTTGAATATGGTAAGTCAGAGTTAGATGAATCTCAAAGATTTGGTGTAGATGAGCTTCTTAAACACGACTTCATCACCACTTACTGTGCTGTATTATCTGAACAAGAACACCACAACAAGAAACTCAGATTGAGTGCTGAAACTAGTGCATGA 930 0.3925 MLDLNDLCWKEEGKVWIPKGVPTFDWDDYKCVEELGRSGRGFSYKVQQISTGKFFAIKKVLIYADEEDDQDHKERIMYDMTLATSIDHPNIMKCLGVCMNQCGVHFLYNWMPDHLCSNRGILRDDESHLAQIAYQVLKGLNYLRNEKGFVFRHLTPGNLLFDLSCSLVKIADVGTVKDRYISLNWLPIRSCYMKYIAPENFHIEDIDGDEEQDRTLQSDRYTKSDVWSLGLCLLEFYHGTFPFHGNDTELLRYLLSGLDLEYGKSELDESQRFGVDELLKHDFITTYCAVLSEQEHHNKKLRLSAETSA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02052 309 Gene3D Transferase(Phosphotransferase) domain 1 25 309 - -
Trre6g02052 309 ProSiteProfiles Protein kinase domain profile. 29 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02052 309 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 26 255 - -
Trre6g02052 309 Pfam Protein kinase domain 29 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02052 309 SUPERFAMILY Protein kinase-like (PK-like) 21 288 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02052 Trre-Chr6 17339675 17343695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02052 32 284 MAP Kinase Kinase Gene Family AT3G21220 29.197 6.17e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre6g02052 Pkinase 8.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02052 K13413 K20604 twl:120010199 95.9005