Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02051 ATGAAGCAGAGACAAAGAGAAGTTATGTTAGAATTTAGAACACCTCAACACCCATCTTTGGGCACAAATAATTGGGAATGGGGAGGTGCATCACCTTTATTAGCAAGAAACATACCCGAAGAATCACTTGAACAAAAGTATGCAAAACTCAACACAATCCGAACCCGCGACGAAATCTTTCTGGCAAGGCCGGCCCAAAGGATTATGAAAACAACACTAGACAAGAACCTTGGCTTAGGAAGCACAATTACTCACAGTCGTTTCTTTTTCGATTGCTGGAGGATAAACTATGGTCCTGATGTGCAGCAGCTTCAGCATGATATAAAATCCTCATTTTCAATTAGCACCGGTATAGACCATGTTCCTACGGGAGGGCCTGATTTCTTTCCAGTGCAGGGTTCTCGAATTTTGCTTGCGATGTTGGATTTGAATGATTTGTGCTGGAAAGAAGAAGGGAAGGTTTGGATTCCGAAAGGGGTCCCAACATTCGATTGGGACGATTACAAGTGCGTCGAAGAGTTGGGCAGAAGTGGGAGAGGATTTTCTTACAAGGTTCAACAAATTTCGACGGGGAAGTTCTTTGCCATCAAAAAGGTTTTGATATATGCGGATGAGGAAGATGATCAAGACCACAAGGAACGTATTATGTATGATATGACTCTAGCTACATCTATTGATCATCCCAATATTATGAAATGTCTAGGTGTGTGTATGAATCAATGTGGTGTTCATTTTCTCTATAATTGGATGCCTGACCATTTGTGTAGTAATCGTGGTATATTACGAGATGATGAGTCACATCTTGCTCAAATAGCATATCAGGTTTTGAAAGGGTTAAATTATTTGAGAAACGAAAAGGGTTTCGTGTTTAGGCATCTCACCCCGGGCAATTTATTGTTCGATCTATCCTGCTCCTTAGTTAAGATTGCTGATGTTGGGACTGTTAAGGATAGGTATATTTCATTAAATTGGCTTCCTATCCGTTCATGCTATATGAAGTACATTGCCCCGGAGAATTTTCACATAGAAGATATTGATGGTGATGAAGAACAAGACCGTACCCTGCAATCAGATCGATACACTAAAAGCGATGTCTGGAGTTTGGGACTTTGTTTACTGGAATTTTATCATGGGACATTCCCGTTTCATGGTAACGATACAGAGCTTCTGAGGTATCTGTTATCAGGTCTTGATCTTGAATATGGTAAGTCAGAGTTAGATGAATCTCAAAGATTTGGTGTAGATGAGCTTCTTAAACACGACTTCATCACCACTTACTGTGCTGTATTATCTGAACAAGAACACCACAACAAGAAACTCAGATTGAGTGCTGAAACTAGTGCATGA 1347 0.4039 MKQRQREVMLEFRTPQHPSLGTNNWEWGGASPLLARNIPEESLEQKYAKLNTIRTRDEIFLARPAQRIMKTTLDKNLGLGSTITHSRFFFDCWRINYGPDVQQLQHDIKSSFSISTGIDHVPTGGPDFFPVQGSRILLAMLDLNDLCWKEEGKVWIPKGVPTFDWDDYKCVEELGRSGRGFSYKVQQISTGKFFAIKKVLIYADEEDDQDHKERIMYDMTLATSIDHPNIMKCLGVCMNQCGVHFLYNWMPDHLCSNRGILRDDESHLAQIAYQVLKGLNYLRNEKGFVFRHLTPGNLLFDLSCSLVKIADVGTVKDRYISLNWLPIRSCYMKYIAPENFHIEDIDGDEEQDRTLQSDRYTKSDVWSLGLCLLEFYHGTFPFHGNDTELLRYLLSGLDLEYGKSELDESQRFGVDELLKHDFITTYCAVLSEQEHHNKKLRLSAETSA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02051 448 Gene3D Transferase(Phosphotransferase) domain 1 164 447 - -
Trre6g02051 448 SUPERFAMILY Protein kinase-like (PK-like) 160 426 IPR011009 -
Trre6g02051 448 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 107 394 - -
Trre6g02051 448 ProSiteProfiles Protein kinase domain profile. 168 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02051 448 Pfam Protein kinase domain 168 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02051 Trre-Chr6 17325943 17331546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02051 171 423 MAP Kinase Kinase Gene Family AT3G21220 29.197 2.41e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre6g02051 Pkinase 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02051 K13413 K20604 pvu:PHAVU_001G159800g 96.6709