Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02044 ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGGAGAAAATGTGTTAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGAACAAGGTGCTACTCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGTAATGTCTCAAAACTTCTTGCACACCTCCCTGTTAGTGATCGTTGCGAAGCTGCGGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGATGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAACTAGCTTATATGAAGGAACAAGCAGCTCAAAGGTGTCTCAATACCTCAATCATTGAAAACCCTAATGAGAAGAACTTTGTAAAACCAAGTAATATTCTCCCTCAAGATCTTCAAATCCAGATGGAAAATTATTCCTACCTATGTCCTCAATTTCTTCCCAACTTGTCCTCATCATCCACTACTAATCTATCAACAACACATTATTATAATGAGAATAGTACAACTCTCATGGATCTAAACCCTATAATTGGAAACTATGAAAATTCAGGAACTTTAGAAGAAAGCATCTCATCATTTTCTAACTTTGATGAGAGATGTAATAACTCAATTGGAAACTATGACAACATGCAAAGGCAGTGGAACTTTCATGAAGTGCATAACCTTCAGTAA 693 0.3737 MMTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAYMKEQAAQRCLNTSIIENPNEKNFVKPSNILPQDLQIQMENYSYLCPQFLPNLSSSSTTNLSTTHYYNENSTTLMDLNPIIGNYENSGTLEESISSFSNFDERCNNSIGNYDNMQRQWNFHEVHNLQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02044 230 Coils Coil 88 108 - -
Trre6g02044 230 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 194 - -
Trre6g02044 230 Pfam Lateral organ boundaries (LOB) domain 8 106 IPR004883 -
Trre6g02044 230 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02044 Trre-Chr6 17266394 17267529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02044 8 123 AS2 family AT3G58190 80.508 7.66e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g02044 LOB 6.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02044 K13945 - gmx:100776678 318.546