Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02043 ATGGCTTCTTCAAATGGAACTAGCTCTGGAACTGGTTCTCCTTGTGGAGCATGCAAGTTCCTAAGAAGAAAATGTGCACCTGATTGCATTTTTGCACCTTACTTTTGTTCAGAACAAGGTCCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTAGCAATGTTTCTAAGTTACTTTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTTACAATTGCTTATGAGGCTCAAGCTCGTATTAGAGACCCTGTTTATGGCTGTGTCTCACACATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATTCAAGTGAAATCTCAGCTGTCACATAACATAGACAATAATCAATGGATAGGGAATAATAATGTTGCTACAACACAACCAATGAATTATCCATTTTGTCCAACTTATATGAATCCTATATCTCCTCAAAGCTCACTTGAGTCATCAATTGATCATAGCAGCAGCATGAATGATGGAATGATGAGCATGCAAGATGTACAAAGTAGTAGAGAAGATTTCTCATTCCAAGCTTGTAATAATTCTAAGAAAAAAATGTCATATAATAATAATAATCATCATGACTTGGGAGAGTTGCAAGAGATTGCACTTAGGATGATGAGGAATTTTGACTAG 657 0.3729 MASSNGTSSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLIQVKSQLSHNIDNNQWIGNNNVATTQPMNYPFCPTYMNPISPQSSLESSIDHSSSMNDGMMSMQDVQSSREDFSFQACNNSKKKMSYNNNNHHDLGELQEIALRMMRNFD 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02043 218 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Trre6g02043 218 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Trre6g02043 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02043 Trre-Chr6 17252161 17253519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02043 1 216 AS2 family AT2G42430 53.226 2.27e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g02043 LOB 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02043 K13944 - gmx:100801508 320.857