Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02040 ATGAGGAAAAGGAAAAACAAAAGAAGAAAAGAAGAAATCGCTGAGGATTGTTGCTTTATGTGCAAGGATGGTGGTGAAATGAGGGTCTGTGATTATAAGGATTGCCTTAAAACTTATCATGCTAAATGCGTGGAAAAAGATGATTCCTTTTTGACGAAAGACGATAATTGGTGTTGTGGTTCCCATTATTGCTACCAATGCAGTAGAGCATCGAAGTTTATGTGCTTGTGCTGCACAACAGCTTTTTGTGGAAAATGCTATTATGGGGCTGAATTTGCTACTGTCAAAGGAAACAAAGGATTTTGTAGGCCCTGCTCAAAACTTGCACTTCTTATTGAGAACAATGCTGACATTGATTCTGATGGAGAATTTATAGATATGAAAGATCGAAGATTCTATGAAAGTTACTTTTTAGATTATTATGAAAATATTAAAAAGAAAGTAGGGCTGAATTCTCAGCATGTTCATATTGCTTATGACACCATTAAAAATGGAAAAAACAAGTGTGACTCGGATTCATATGAAATATGTGATGGGGAAGATGATAGTGGTTCTGACTGTGACCTGGATTATACAGCAGGGGTTCAATCAGTCAGGAGAAAGAAGACGTGCATGAAAAAGGTAAAATCAGTAAAAGGATCAAAAGCAGTGAAAGATAAGAAAACGGATTTTGTTGGATGGGGTTCAAGAAGCCTCGTGGATTTTCTTAAAAATATTGGTAGAGACACGACCAAAGAGTTTTCCGAACTTGATGTTGGTTCAATCATCATTGAGTACTGCCATGAAAACAAGCTTTTTGACCCCAAGAAAAGGAAAAGAGTAATATGTGATGCAAATTTATGGGCTTTACTACGGAGGAAATCCGTGAACAAAAACAACATACAAAACCTTCTGGCATCACATTTTGCTGAGAATGTTGAGGAAACTGATGATGCCATCAGTGGTTCAGAAGAAATGGATAATGTAGAGGCAATCAATTTTCCAAAACAGAAAAATCTGAACCCAACTACAAAATCGTGTCAGAACGTAGTTTTTGAAGAGCTTCCAAGTGGATTTGCAGCTATAATTAGCTCAAACTTAAAACTTGTCTACTTGAAGAGAAGCTTAATTGTGGAGCTTTCAAAGCAACCAGAAACCTTTGATGGTAAATTGTTGGGAAGTTTTGTTAGAACCAAATCTGACCCAAATGACTATTTACAGAAGAATTCCCATCTGCTCTTACAAGTAATAGGAATTAACAGATCAAAGAAAGACGAACTCCACCAAGAAATTTTGCTCCGCCTTTCTAATGTGCCAAAAGATATCCCTATCAGCAAAATTTCGGATGATGACTTTTCTGAGGAAGAATGTCAAGATTTGTTTCAGAGAATGACAAATGGTCTGTTCAAAAAGCCAACTATACTGGAGCTTGAGCAGAAAGCCAGAACTCTGCATGAAGATAGGATGAAACATTGGATCTCAAGGGAGATAGCATTGTTACGAAATCGTATTGATCTGGCCAATGAAAAGGGATGGAGGAGAGAATATCCTTTCATGATAATTTTGTTAATGTTACTTCATATTAAAAGCTAA 1572 0.3664 MRKRKNKRRKEEIAEDCCFMCKDGGEMRVCDYKDCLKTYHAKCVEKDDSFLTKDDNWCCGSHYCYQCSRASKFMCLCCTTAFCGKCYYGAEFATVKGNKGFCRPCSKLALLIENNADIDSDGEFIDMKDRRFYESYFLDYYENIKKKVGLNSQHVHIAYDTIKNGKNKCDSDSYEICDGEDDSGSDCDLDYTAGVQSVRRKKTCMKKVKSVKGSKAVKDKKTDFVGWGSRSLVDFLKNIGRDTTKEFSELDVGSIIIEYCHENKLFDPKKRKRVICDANLWALLRRKSVNKNNIQNLLASHFAENVEETDDAISGSEEMDNVEAINFPKQKNLNPTTKSCQNVVFEELPSGFAAIISSNLKLVYLKRSLIVELSKQPETFDGKLLGSFVRTKSDPNDYLQKNSHLLLQVIGINRSKKDELHQEILLRLSNVPKDIPISKISDDDFSEEECQDLFQRMTNGLFKKPTILELEQKARTLHEDRMKHWISREIALLRNRIDLANEKGWRREYPFMIILLMLLHIKS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02040 523 Pfam SWIB/MDM2 domain 231 302 IPR003121 -
Trre6g02040 523 ProSiteProfiles Plus3 domain profile. 354 482 IPR004343 GO:0003677
Trre6g02040 523 PANTHER OS01G0884500 PROTEIN 40 513 IPR045894 -
Trre6g02040 523 Gene3D SWIB/MDM2 domain 213 312 IPR036885 -
Trre6g02040 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 109 IPR013083 -
Trre6g02040 523 Gene3D - 356 479 IPR036128 GO:0003677
Trre6g02040 523 SMART rtf1 354 459 IPR004343 GO:0003677
Trre6g02040 523 ProSiteProfiles SWIB/MDM2 domain profile. 224 304 IPR003121 -
Trre6g02040 523 SUPERFAMILY Plus3-like 355 479 IPR036128 GO:0003677
Trre6g02040 523 SUPERFAMILY SWIB/MDM2 domain 220 307 IPR036885 -
Trre6g02040 523 CDD PHD5_NSD 18 62 - -
Trre6g02040 523 Pfam Plus-3 domain 359 457 IPR004343 GO:0003677
Trre6g02040 523 CDD SWIB-MDM2_like 227 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02040 Trre-Chr6 17224910 17231967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02040 2 89 PHD Transcription Factor Family AT3G14980 29.703 2.29e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Trre6g02040 Plus-3 4.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02040 - - tpra:123916305 832.017