Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02038 ATGGCGTCAACCAATCGCACAGTGTTGCAATTCTCATCATCTTCTTCGCCTTCTCAGAGCTTATCCGCTAAGGTTCATCCTCTTGTTGTCTTCAACATCTGCGACTGTTACGTTCGTCGCCCTGATCAAGCCGAACGCGTCATTGGAACGCTTCTCGGATCTGTTCTTCCTGATGGAACCGTCGATATCCGTAATTCATATGCCGTTCCTCACAACGAGTCTGTCGATCAGGTTGCTTTGGACATAGAGTACCACCATAATATGTTACTGTCCCACCAAAAAGTGAATCAAAAGGAAGTCATAGTTGGATGGTATTCAACTGGACATGGAGTAACCGGTGGAAGTGCATTGATCCATGAATTTTATTCTCGAGAAGTACCCAATCCCATTCATTTGACTGTTGACACGGGATTCACAACTGGAGGGGGTACCATAAAGGCTTATGTGACAAACAATTTATCTCTTGGAGATAGGCAAATTGCTGCACAGTTTCAAGATATTCCATTGGATCTTCGTATGGTTGAAGCTGAGCGAGTTGGATTTGATATCCTAAAGGCAACCGCTGTTGAAAAAATTCCCTCTGATTTAGAAGGCATGGAAGCATCAATGGAACATCTGCTAGCTTTGATTGATGACATCTACAAATATGTTGATGATGTTGTGGAAGGACGAGTCGCACCAGACAACAAAATTGGGAAATTTATTTCAGATGCAGTAGGTTCTCTTCCCAAATTGCCTCCATCAGATTTTGATAAGCTTATCAATGACAGCTTGCAGGATCACTTGCTCATGCTATATTTATCTAGGATCACAAGAACTCAACTTAGCTTGGCTGAAAAATTGAACACCGCTGCTCAGATTTTGTAA 867 0.4245 MASTNRTVLQFSSSSSPSQSLSAKVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNQKEVIVGWYSTGHGVTGGSALIHEFYSREVPNPIHLTVDTGFTTGGGTIKAYVTNNLSLGDRQIAAQFQDIPLDLRMVEAERVGFDILKATAVEKIPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRVAPDNKIGKFISDAVGSLPKLPPSDFDKLINDSLQDHLLMLYLSRITRTQLSLAEKLNTAAQIL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02038 288 Gene3D Cytidine Deaminase, domain 2 10 189 - -
Trre6g02038 288 CDD MPN_eIF3f 24 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre6g02038 288 SMART pad1_6 22 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre6g02038 288 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 21 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre6g02038 288 MobiDBLite consensus disorder prediction 1 20 - -
Trre6g02038 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre6g02038 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 11 285 - -
Trre6g02038 288 ProSiteProfiles MPN domain profile. 23 154 IPR037518 -
Trre6g02038 288 Pfam Maintenance of mitochondrial structure and function 175 281 IPR024969 -
Trre6g02038 288 FunFam Eukaryotic translation initiation factor 3 subunit F 9 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02038 Trre-Chr6 17216327 17219710 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02038 2 288 Eukaryotic Initiation Factors Gene Family AT2G39990 74.914 7.36e-159 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02038 K03249 - gmx:100790913 500.745