Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02030 ATGACTAGGAAGAAGGTGAGACTTGCCTTTATCTCTGATGATTCAGCAAGGAAGGCAACCTACAAGAAAAGAAAGAAGGGCATCATAAAGAAGGTGAGTGAACTCACCATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCAAATCCTTTTGATTCTAAAACAGAGGTGTGGCCAGATCTAGCGGGAGCCAAGCAGATTATTGAGAGGTATCAAAATTCATCTGTAATAAATGGGGCAAAAAATGTGAACCAAGAGAGCTTCCTCTTACAGAGGATTACTAAAGCTAGGGAGCAACTTAAAAAGCTAAAACACGACAATCATGAGAAGGAGATGACCATTTGTATGATTGAGTATATGAAAAATAAGCAGCTGCCTAATGATCTATCTGTTTCAGATTTGAAAGAATTTGAAAAGCTAATTGAGAAAAATCTGAAAGAGATTGTTAACAAGATTGTTGAGCTCAATTGA 471 0.3694 MTRKKVRLAFISDDSARKATYKKRKKGIIKKVSELTILCGIPACAIISNPFDSKTEVWPDLAGAKQIIERYQNSSVINGAKNVNQESFLLQRITKAREQLKKLKHDNHEKEMTICMIEYMKNKQLPNDLSVSDLKEFEKLIEKNLKEIVNKIVELN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02030 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre6g02030 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g02030 156 Coils Coil 86 113 - -
Trre6g02030 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Trre6g02030 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre6g02030 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre6g02030 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g02030 156 Gene3D - 13 154 IPR036879 GO:0003677|GO:0046983
Trre6g02030 156 PANTHER MADS BOX PROTEIN 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02030 Trre-Chr6 17164705 17165175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02030 1 155 MADS-box Gene Family AT5G26630 44.231 1.71e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g02030 SRF-TF 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02030 - - gmx:100792290 201.06