Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre6g02019 | ATGTCTTTTATTGGTACTCAACAAAAGTGTAAGGCTTGTGAGAAAACGGTTTATCCCGTTGATCAACTTTCTGCTGATGGTACTTCTTACCATAAAGCTTGTTTCAGATGCTCCCATTGCAAAGGAACTTTAAAGCTGAGCAACTATTCATCAATGGAAGGCGTTCTTTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAGCACGGCAACTTCAAGAAGAACTTCCAATCTCCTGCAAAGTCAGCTGACCCGGCAACTCCTCAGCTTACAAGGACCCCTAGCAAAGCTGCAGGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGCAAAACTGCTTATCCTTTGGAGAAGGTAACAGTGGAAAGCCAGGCCTATCACAAATCATGTTTCAAGTGTTCACACGGTGGTTGTCCTATAACTCCATCAAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCATTTCTCTCAACTTTTTAAGGAGAAAGGGAGTTATAATCATCTTATCAAGTCTGCATCAGTCAAACGTGCTGCAACCTCCGTTCCAGAATCTTGA | 570 | 0.4281 | MSFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKEHGNFKKNFQSPAKSADPATPQLTRTPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASVKRAATSVPES | 189 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre6g02019 | 189 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Trre6g02019 | 189 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Trre6g02019 | 189 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 100 | 133 | - | - | |
| Trre6g02019 | 189 | CDD | LIM2_SF3 | 108 | 168 | - | - | |
| Trre6g02019 | 189 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Trre6g02019 | 189 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Trre6g02019 | 189 | Gene3D | Cysteine Rich Protein | 102 | 172 | - | - | |
| Trre6g02019 | 189 | ProSiteProfiles | LIM domain profile. | 106 | 166 | IPR001781 | - | |
| Trre6g02019 | 189 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Trre6g02019 | 189 | Pfam | LIM domain | 108 | 163 | IPR001781 | - | |
| Trre6g02019 | 189 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Trre6g02019 | 189 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Trre6g02019 | 189 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Trre6g02019 | 189 | SMART | lim_4 | 107 | 159 | IPR001781 | - | |
| Trre6g02019 | 189 | FunFam | LIM domain and actin-binding 1 | 102 | 172 | - | - | |
| Trre6g02019 | 189 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Trre6g02019 | 189 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 134 | 173 | - | - | |
| Trre6g02019 | 189 | PANTHER | OS06G0237300 PROTEIN | 5 | 109 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre6g02019 | Trre-Chr6 | 17092284 | 17095377 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Trre6g02019 | LIM | 1.7e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre6g02019 | K09377 | - | zju:107413774 | 367.851 |