Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02019 ATGTCTTTTATTGGTACTCAACAAAAGTGTAAGGCTTGTGAGAAAACGGTTTATCCCGTTGATCAACTTTCTGCTGATGGTACTTCTTACCATAAAGCTTGTTTCAGATGCTCCCATTGCAAAGGAACTTTAAAGCTGAGCAACTATTCATCAATGGAAGGCGTTCTTTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAGCACGGCAACTTCAAGAAGAACTTCCAATCTCCTGCAAAGTCAGCTGACCCGGCAACTCCTCAGCTTACAAGGACCCCTAGCAAAGCTGCAGGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGCAAAACTGCTTATCCTTTGGAGAAGGTAACAGTGGAAAGCCAGGCCTATCACAAATCATGTTTCAAGTGTTCACACGGTGGTTGTCCTATAACTCCATCAAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCATTTCTCTCAACTTTTTAAGGAGAAAGGGAGTTATAATCATCTTATCAAGTCTGCATCAGTCAAACGTGCTGCAACCTCCGTTCCAGAATCTTGA 570 0.4281 MSFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKEHGNFKKNFQSPAKSADPATPQLTRTPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASVKRAATSVPES 189
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02019 189 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Trre6g02019 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Trre6g02019 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Trre6g02019 189 CDD LIM2_SF3 108 168 - -
Trre6g02019 189 FunFam LIM domain and actin-binding 1 4 74 - -
Trre6g02019 189 Gene3D Cysteine Rich Protein 4 74 - -
Trre6g02019 189 Gene3D Cysteine Rich Protein 102 172 - -
Trre6g02019 189 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Trre6g02019 189 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Trre6g02019 189 Pfam LIM domain 108 163 IPR001781 -
Trre6g02019 189 Pfam LIM domain 10 65 IPR001781 -
Trre6g02019 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Trre6g02019 189 SMART lim_4 9 61 IPR001781 -
Trre6g02019 189 SMART lim_4 107 159 IPR001781 -
Trre6g02019 189 FunFam LIM domain and actin-binding 1 102 172 - -
Trre6g02019 189 CDD LIM1_SF3 6 68 - -
Trre6g02019 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Trre6g02019 189 PANTHER OS06G0237300 PROTEIN 5 109 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre6g02019 Trre-Chr6 17092284 17095377 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Trre6g02019 LIM 1.7e-10 CL0167
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02019 K09377 - zju:107413774 367.851