Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01974 ATGAACACAACTACCCTCCTTCTTCTAACATCATCACTACTTCTCCTATCATGTGCAACGCACGTGATCTCCGTCACACCATGTCCACCTTGCGGCAACACCACCGTACCATTTCCACTCAGCACAACTCCAACATGCGGTGACCCGTTATACAAAATCCAGTGCACCACTTCCGGTTCATTACTTTTCAACACAGTAAACAATTCATACCCAATCCAATCCATTAACCCGAAAACACAACGGATCATAATTCAACCCGCTTCAATAATCCCAAAAACCTGCACTACTACCGATAAAATCCACCAAGGAATCATACTCAACAATACTCTTCCATTCAACATCACAAGCTCAAACACGATCGTGTATCTTAACTGTACACGTACGCTTCTTCTATCTCCGCTTAATTGCTCCGCCGCGAGTGCTTGTCATGCTTACATCAACAATACGGAGTCTATTTCCGCGTGTCAGACCGGTCCGGTTTGTTGTACTTATCGAACCGGTGGTTCGAGTAATTCGTACCAGATTCGTGTTAGGGATTCGGGATGTAGTGCTTATTCGAGTTTTGTTAATCTTGATACTGGTCTTTCAGTGAACCGGTGGTCTAGACCGGGTTTAGAGATTCAGTGGTTGGCGCCTAGAGAAACTGTTTGTGTGTCACAGAATGATTGTGATGCTGCCACGTCGACTTGTGGGGTTGATAGTTCTTCGGCTAATGGGATCAAGAGATGTTTTTGTAATGGGGAGCTTGTGTGGGACTCGGTTCAAGGAGTGTGTACTAAAAAAATTACTTGCTTTAATCCGGATGGGTGTGACTCGAGCAATAAGACAGCCATTATAGCAGGTACAACATGTGGAGTTGGAGCTGCACTAATCCTAGCAATAGTTGCATTTCTTCTATACAAACGCCACAAACGTATATTAGAAGCACAACAACGACTAGCCAAAGAGCGTGAAGGAATTCTAAACGCAAGTGGTGGAGGAAAAGCCGCCAAACTTTTCACCGGAAAAGAGATAAAAAAAGCCACTAATGATTTCTCAGCCGATCGCCTCCTTGGGGTTGGCGGCTATGGTGAAGTCTACAAAGGCATTCTTTCAGATGGAACTAATGTAGCTGTTAAATGTGCTAAGCTCGGAAACCCAAAAGGCACTGACCAAGTCCTCAACGAAGTTCGCATATTATGCCAAGTTAACCACAGAAACCTCGTTGGTTTACTTGGTTGCTGTGTCGAATTGGAGCAACCAATTTTGGTTTATGAGTTCATAGAAAATGGGACCCTTCTTGATCATTTAACAGGTCAAATGCCAAAGGGCCGTGCTTCACTAAATTGGAACAATCGTCTTCACATTGCTCGCGATACTTCTGAAGGTCTTACTTACCTTCACTTCATGGCAGTGCCACCGATTTACCATAGAGATGTTAAATCAAGTAACATTCTTCTAGATTTCAAGATGAACGCTAAGGTTTCGGATTTCGGGTTATCTCGTTTGGCTCAAACGGATATGAGTCATATCTCAACTTGTGCTCAAGGAACACTTGGGTATCTTGATCCTGAGTATTATAGAAACTATCAGTTAACCGATAAGAGTGATGTTTATAGCTTCGGAGTTGTGTTGCTTGAGCTCTTGACGTCTCAGAAGGCGATAGATTTTAACAGGGCTTCGGATGATGTGAATTTGGCAGTTTACGTGCAGAGGATGATGGATGAAGAGAAGTTGATAGAGGTTATTGATCCTGTTTTGAAGGATGGAGCTAGTAATATAGAGCTTGATACTATGAAGGCTTTGGCATTTTTGGCTTTAGGTTGTTTGGAGGAGAAAAGACAGAATCGACCTTCAATGAAAGAGGTGTCAGAAGAGATTGAGTATATCATCAGTATTGCCTCTGCAAAGGGAGTGGAGAAGTAG 1905 0.4315 MNTTTLLLLTSSLLLLSCATHVISVTPCPPCGNTTVPFPLSTTPTCGDPLYKIQCTTSGSLLFNTVNNSYPIQSINPKTQRIIIQPASIIPKTCTTTDKIHQGIILNNTLPFNITSSNTIVYLNCTRTLLLSPLNCSAASACHAYINNTESISACQTGPVCCTYRTGGSSNSYQIRVRDSGCSAYSSFVNLDTGLSVNRWSRPGLEIQWLAPRETVCVSQNDCDAATSTCGVDSSSANGIKRCFCNGELVWDSVQGVCTKKITCFNPDGCDSSNKTAIIAGTTCGVGAALILAIVAFLLYKRHKRILEAQQRLAKEREGILNASGGGKAAKLFTGKEIKKATNDFSADRLLGVGGYGEVYKGILSDGTNVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTLLDHLTGQMPKGRASLNWNNRLHIARDTSEGLTYLHFMAVPPIYHRDVKSSNILLDFKMNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRASDDVNLAVYVQRMMDEEKLIEVIDPVLKDGASNIELDTMKALAFLALGCLEEKRQNRPSMKEVSEEIEYIISIASAKGVEK 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01974 634 ProSiteProfiles Protein kinase domain profile. 345 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01974 634 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Trre6g01974 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Trre6g01974 634 FunFam Wall-associated receptor kinase-like 20 421 633 - -
Trre6g01974 634 SUPERFAMILY Protein kinase-like (PK-like) 330 619 IPR011009 -
Trre6g01974 634 CDD STKc_IRAK 351 621 - -
Trre6g01974 634 Gene3D Transferase(Phosphotransferase) domain 1 421 631 - -
Trre6g01974 634 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 623 IPR044652 GO:0004672
Trre6g01974 634 Pfam Wall-associated receptor kinase galacturonan-binding 28 84 IPR025287 GO:0030247
Trre6g01974 634 SMART serkin_6 345 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01974 634 Gene3D Phosphorylase Kinase; domain 1 307 420 - -
Trre6g01974 634 FunFam Wall-associated receptor kinase-like 20 307 420 - -
Trre6g01974 634 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01974 Trre-Chr6 16643881 16647060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01974 17 633 Receptor kinase-like Gene Family AT5G02070 52.351 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre6g01974 PK_Tyr_Ser-Thr 6.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01974 - - gmx:100305415 1028.08