Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01967 ATGGCTGGAATGTGCTGTGGTGTTGTTGGTGAAGGAGAATCTCCGGCGAGTTCACGTCCATCCAGACGACGGAATTTAGACTTACTACCTTTCAAATACATCGCCGACATGGCGTCCGGAACTTCACGGAAACGACGCCAAGCGGATCTCTGTAAGAACAACGATTTTGAAAGCTGTGATGACTCGAGCGATGACAAAAGTAAGAAGAACAAAAAGGAATCCAAAGTAAGCGATTCGGAAGATAAATCTTCAACGGAAGGTAGTTCTGAAGATGGAGAGTTTCCAAAGTTTGGTGTTACTTCAGTTTGCGGTAGAAGAAGAGACATGGAAGATTCCGTTTCAGTTAAACCTTCTTTCTCTTCGCAAGAACCGTTTCACTACTTCGGTGTTTTTGACGGTCACGGTTGCTCTCATGTTGCAACTATGTGTAAGGAGAGACTTCACGAAATTGTGAAGGAAGAAATCAACGAATCACAAGAGAATTTCGAGTGGAGTAGCACTATGCAACAAGGATTCGCTCGCATGGACGATGAAGTTCAGAGATGGAATAGTAGCAACCAAACCGTTACTTGCAGATGCGAGCTACAAACTCCGCACTGCGACGCTGTCGGATCCACCGCCGTCGTAGCCGTTGTAACACCAGACAAAATAATCGTCTCAAACTGCGGTGACTCCCGTGCTGTTCTCTGCCGTAACGGCGTTGCCATCCCACTCTCCTCCGATCACAAGCCGGATCGACCCGACGAGTTGCTCCGTGTTCAAGCGGCAGGAGGGCGCGTGATCTACTGGGATGGTCCAAGAGTGCTTGGTGTACTCGCCATGTCTAGAGCAATAGTAAGTGTGTCTCTAAAGCCATATGTGATATCAGAACCCGAGGTAACGGTAACGGAGAGAAAAGACGAAGATGAGTGTTTGATACTAGCGAGTGATGGATTATGGGATGTTGTTTCAAACGACACCGCATGTGGTGTTGTTAGGATGTGTTTAATGGCACAGAAGCTGCCGTCGCCACCGGGTTCTCCCGGTAACAACGACGTGACGACAGATGGTTCCGATCGGGCATGTTCTGATGCGTCAATTTTGTTGACTAAGTTGGCTTTAGCAAGACATAGTTCGGATAATGTTAGTGTGGTGGTGATTGATTTAAGGAGAGATCAACGACAATTATCAAATTCCAACACTAATTAA 1188 0.4689 MAGMCCGVVGEGESPASSRPSRRRNLDLLPFKYIADMASGTSRKRRQADLCKNNDFESCDDSSDDKSKKNKKESKVSDSEDKSSTEGSSEDGEFPKFGVTSVCGRRRDMEDSVSVKPSFSSQEPFHYFGVFDGHGCSHVATMCKERLHEIVKEEINESQENFEWSSTMQQGFARMDDEVQRWNSSNQTVTCRCELQTPHCDAVGSTAVVAVVTPDKIIVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQAAGGRVIYWDGPRVLGVLAMSRAIVSVSLKPYVISEPEVTVTERKDEDECLILASDGLWDVVSNDTACGVVRMCLMAQKLPSPPGSPGNNDVTTDGSDRACSDASILLTKLALARHSSDNVSVVVIDLRRDQRQLSNSNTN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01967 395 CDD PP2Cc 96 382 IPR001932 -
Trre6g01967 395 Pfam Protein phosphatase 2C 97 374 IPR001932 -
Trre6g01967 395 ProSiteProfiles PPM-type phosphatase domain profile. 96 382 IPR001932 -
Trre6g01967 395 FunFam Protein phosphatase 2C 37 91 389 - -
Trre6g01967 395 Gene3D - 91 391 IPR036457 -
Trre6g01967 395 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Trre6g01967 395 SMART PP2C_4 86 380 IPR001932 -
Trre6g01967 395 PANTHER PROTEIN PHOSPHATASE 75 382 IPR015655 GO:0004722|GO:0006470
Trre6g01967 395 SUPERFAMILY PP2C-like 95 383 IPR036457 -
Trre6g01967 395 MobiDBLite consensus disorder prediction 42 89 - -
Trre6g01967 395 MobiDBLite consensus disorder prediction 40 93 - -
Trre6g01967 395 MobiDBLite consensus disorder prediction 1 25 - -
Trre6g01967 395 SMART PP2C_SIG_2 108 382 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01967 Trre-Chr6 16568565 16570236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01967 42 384 PP2C-type Phosphatase Gene Family AT2G29380 58.924 1.22e-137 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01967 K14497 - gmx:100776356 555.444