Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01959 ATGGAAGCTATTCTCATTGAGATCCCTCGTGGAGAAGATATTGTGGAGCGTATAATCCAATGTGCACAGCACCGTGGAGCCAACATAACAGTGTTGAGTGCTTCCGGCCCTGTGTCTGATGTTACCCTCCAAGCTCCAAATCTCCCGATAGAAGGACCAGTCTATATGACAAATCTATCGGGGACATATATAAATGCCAATTTTGATGTTCCCCCACGATTCATCGCTGACCCACCACATTCTTCATTTTCGATTTGTTTTTCTAACAATGATGGACAGGTGTTTGGAGGAACTGTTGGAGGACCAATTATTGCTGCTGATGTTATTTACGTTAATGCTGCTCTTATCAATGATTTTGATGTTGTAGATGTTGATACAATTCAGATTGATAGCGAGAGTGATAGCAACTAG 411 0.4209 MEAILIEIPRGEDIVERIIQCAQHRGANITVLSASGPVSDVTLQAPNLPIEGPVYMTNLSGTYINANFDVPPRFIADPPHSSFSICFSNNDGQVFGGTVGGPIIAADVIYVNAALINDFDVVDVDTIQIDSESDSN 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01959 136 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 118 IPR014476 GO:0003680
Trre6g01959 136 Gene3D - 1 130 - -
Trre6g01959 136 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 119 - -
Trre6g01959 136 ProSiteProfiles PPC domain profile profile. 1 136 IPR005175 -
Trre6g01959 136 CDD DUF296 4 105 IPR005175 -
Trre6g01959 136 Pfam Plants and Prokaryotes Conserved (PCC) domain 4 114 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01959 Trre-Chr6 16489242 16489652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01959 1 118 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.333 3.88e-15 68.2