Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01958 ATGGAACCTATTCTCATTGAGATCCCTCATGGAGAAGATATTGTGGAGGGTATAATCCAATGTGCACAGCACCGCGAAGCCAACATAATAGTGTTGAGTGCTTCCGGACCTGTTTCTTATGTTACCCTCCATTCCCCAAATCTCCTGATAGAAGGACCAGTCTATATGACAAATCTATCGGGAACATATATCAATGCCAATTTTGATGATGTTCCCTCGCAATTCATCGCTGACCCACCACATTCTTCATTTTCGATTTGCTTCTGTAACAATGATGGACAGGTGTTTCGAGGAACTGTTGAAGGACCAATTATTGCTGCTGATGTTATTTACGTTAATGCTGTTATTTGCAATGAATTTTGA 363 0.4077 MEPILIEIPHGEDIVEGIIQCAQHREANIIVLSASGPVSYVTLHSPNLLIEGPVYMTNLSGTYINANFDDVPSQFIADPPHSSFSICFCNNDGQVFRGTVEGPIIAADVIYVNAVICNEF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01958 120 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 117 IPR014476 GO:0003680
Trre6g01958 120 Gene3D - 3 118 - -
Trre6g01958 120 ProSiteProfiles PPC domain profile profile. 1 120 IPR005175 -
Trre6g01958 120 CDD DUF296 3 106 IPR005175 -
Trre6g01958 120 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 112 IPR005175 -
Trre6g01958 120 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01958 Trre-Chr6 16477917 16478279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01958 1 118 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.031 2.62e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01958 - K18592 tpra:123913361 152.525