Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01948 ATGGAGGAATCTCAAAATTTGATGTGGATGAAAAGGAAACAAGTCTTGAACTCACATATTGAAGCAGTACCATCTTTTGAAGTTGGAGCTATGAACAACAATAATAAGTCTTGGGAAGAAAAAGCTTTTGCAGAAGATGCAGCTAGAATACTTGGTGGATGTATATGGCCTCCAAGATCTTACTCATGTCATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCCTTAGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCTAAACTCAAACAAAGTCTTGGTCACCATAATGAATTAGACCTTCATTCTCTTCATCAAAATCATTTTACAACAAGCAGAGTTAATTCATCTTCTTGGCCCTCAACTATATCAACACAAGAAAATTGCTTTGAGCCAAACAAGTCTTTATATTCTTCTTCAATTAGATGGGGGAATAGCCACATGGTGTCTCATGATTCTGAACCAAAAGAGCTACTAGTTAATGCAAGGGAACAAATTTTCAAAGGTTATTGTTGCAATGATTATGTTGAAACAAGTTTGTCTATGGGACAAAATAATTCAATGTTTGGCCAAAAATTACTAACTGATGATTTTTGTGGGGACAAAGGCAACACTTATAAAAAACCAAGGACAACTTCTATTTTTCACAAGCCATGTTTGAATGATAGATGTCTAACTTTTCAGTCTGCAGAGTTTGTGATTGGAATTAAGCCTGGAATGGAAGACTTGGATCTTGAACTCAGACTAGGGAAATTAACACAGAAAGTTTAG 774 0.3566 MEESQNLMWMKRKQVLNSHIEAVPSFEVGAMNNNNKSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRAKLKQSLGHHNELDLHSLHQNHFTTSRVNSSSWPSTISTQENCFEPNKSLYSSSIRWGNSHMVSHDSEPKELLVNAREQIFKGYCCNDYVETSLSMGQNNSMFGQKLLTDDFCGDKGNTYKKPRTTSIFHKPCLNDRCLTFQSAEFVIGIKPGMEDLDLELRLGKLTQKV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01948 257 Pfam C2H2-type zinc finger 61 85 - -
Trre6g01948 257 PANTHER OS07G0101800 PROTEIN 32 252 - -
Trre6g01948 257 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Trre6g01948 257 SUPERFAMILY beta-beta-alpha zinc fingers 58 88 IPR036236 -
Trre6g01948 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01948 Trre-Chr6 16377337 16378338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01948 26 93 C2H2 Transcription Factor Family AT2G37740 66.176 7.54e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g01948 zf-C2H2_6 4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01948 - - aprc:113851273 330.487