Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01942 ATGGCTAATCGTTGGTGGACTGATAATGTGGCAATGAGTCAGAGAGAATCAATGCCTTCATCACCATCATCACTTCAACATCTCAAAAGAGAACAAGAATTGATGGAAAACAACAACAACAACTCAACTCCAACTAATAGTAGCAGCAACAACAACAACAACGAGGAAGAAGATAACAACAACAACAATGAAGAACAAAACCCATCTGAGCCAGGAAGTAGTAGCGGTGGTCGGAGGCCACGTGGCAGACCACCAGGTTCTAAGAACAAACCAAGACCGCCTATTGTTATAACAAAAGAATCTCCCAACGCGCTTCGAAGCCACGTGTTGGAAATCAGTAGTGGAAGTGATGTGGCGGAGAGTATAGCAACTTTTGCTAACCGGCGACACCGTGGTGTGTCGGTTTTAAGTGGGAGTGGCATTGTTGCTAATGTGACGCTTAGACAACCTGCTGCTCCTGGTGGTGTTATTACTCTTCATGGAAGATTCGAGATACTTTCGCTTTCGGGGGCTTTTTTGCCTTCACCTTCTCCAGCTGGTGCTACTGGATTGACTGTTTATTTAGCTGGTGGTCAGGGGCAGGTTGTTGGTGGTGCTGTCGCCGGTTCTTTGGTTGCTTCTGGACCTGTGATGGTTATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTACCATTGGAAGATGAACAAGGTGGTGGTGAACAAGAGGAAATGCAAGTTCAACAACAGCAACAACAACAACAATCTGGTGTGAATTCAGCAACTGTTGCAGTTACTTCTTCTCAAGGTTTGGAATTAGGTGAACATCAACAACAGGTTTCAATGCCTATGTATAATTTGCCACCAAATTTGATGCATAATGGTACTCAGATGTCTCATGATGTGTTTTGGGGTCCTCCACCTCCTCGTCCTCCTCCTCCTTCTTTCTGA 933 0.4491 MANRWWTDNVAMSQRESMPSSPSSLQHLKREQELMENNNNNSTPTNSSSNNNNNEEEDNNNNNEEQNPSEPGSSSGGRRPRGRPPGSKNKPRPPIVITKESPNALRSHVLEISSGSDVAESIATFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLSGAFLPSPSPAGATGLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATFANATYERLPLEDEQGGGEQEEMQVQQQQQQQQSGVNSATVAVTSSQGLELGEHQQQVSMPMYNLPPNLMHNGTQMSHDVFWGPPPPRPPPPSF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01942 310 ProSiteProfiles PPC domain profile profile. 102 240 IPR005175 -
Trre6g01942 310 Gene3D - 105 249 - -
Trre6g01942 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 230 - -
Trre6g01942 310 MobiDBLite consensus disorder prediction 236 259 - -
Trre6g01942 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 106 218 IPR005175 -
Trre6g01942 310 MobiDBLite consensus disorder prediction 35 57 - -
Trre6g01942 310 CDD DUF296 106 188 IPR005175 -
Trre6g01942 310 FunFam AT-hook motif nuclear-localized protein 105 232 - -
Trre6g01942 310 PIRSF ESCAROLA 14 310 IPR014476 GO:0003680
Trre6g01942 310 MobiDBLite consensus disorder prediction 287 310 - -
Trre6g01942 310 MobiDBLite consensus disorder prediction 1 102 - -
Trre6g01942 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 299 IPR014476 GO:0003680
Trre6g01942 310 MobiDBLite consensus disorder prediction 1 28 - -
Trre6g01942 310 MobiDBLite consensus disorder prediction 229 259 - -
Trre6g01942 310 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01942 Trre-Chr6 16316665 16317597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01942 1 307 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.495 2.09e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01942 - - gmx:102667174 289.271