Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01939 ATGGCAAAAACACCCTTGCTTTTTCTCTGCATATTCATCCTTCTAGCCTCAAACTCCATAATACAATCTCATTCTCAACAAGATGAGTTTTTCTTTTCTGGATTCAATGAAGCTGCTACAAACATAACCTTAAACGGAGGTGCAATAATTGAACACAAAGGAACAATTCGTTTAACAAATGACACTGAAAGAGTACTTGGTCATGCTTTTTATTCAAATCCAATCCAATTCAAAAACTCCAACAACTCAACCAAAGTTTTCTCTTTTTCAACTTCTTTTGCTTTTGCAATTATCCCTCAATATCCAAAACTAGGAGGCCATGGATTTGCCTTCACCATTTCACCTTCCAAAAAACTCTCCAATGGCTATCCAAGTCAGTACTTAGGCCTTCTCAACCCACATGATTTAGGTAACTTCTCCAACCATCTATTCGCAGTCGAATTCGACACAGTCCAAGACTTCGAATTCAACGACATCAATGACAATCATGTTGGTATAAACCTTAACAACATGGTATCAAACAAATCAGTAAAAGCATGTTTTTTTACTGATGGGTCAGTTCAAGATCTCAATTTGAAGAGTGGTAGTGTGATTCAAGCATGGATTGATTACAATTCTTCAATGAATCATCTTGAAGTTAGACTTTCACCAACTTCATCAAAACCAAGTTCACCAATCTTATCATACAAAGTAGATCTAACACCAATTCTTCAAGAAACTATGTTTATTGGGTTTTCTTCTTCAACAGGGTTACTCTCTAGCTCACACTATATACTAGGTTGGAGCTTCAAAATCAATGGAGAATCCAAAACACTGTCTTTGAAACATCTTCCTTCACTCTCTTCACATAACAAAAACAGTAAAAAATCCTTAATCTTAGAAGCTTGGGAACTTGAAGTAGGACCACATAGATTCCCTTACAAAGAACTGAAGCAAGCAACAAAAGGGTTCAAGGAAAAAAACCTTCTTGGATTTGGAGGTTTTGGTAAAGTTTACAAAGGTGTGATAGTGTCATCAAATTCCAAAACTGAAATAGCTGTGAAACAAATTTCCCATGAATCAAAACAAGGGGTGCAAGAGTTTATATCAGAAATAGAAACAATAGGAAAACTTCGTCATAGGAATCTAGTACAGTTACTAGGTTGGTGTCGGAAGAAAAATGATTTAATCTTAGTGTATGATTATATGGAAAATGGAAGTTTAGATAAATATATATTTGAAAAACCAAGAAGAATATTGAAATGGGAAGAAAGGTTTAGGATCATAAAAGGTGTAGCTTGTGGGTTAGTTTATCTGCATGAAGAATGGGAACAGACAGTGATACATAGAGATGTTAAAGCTGGGAATGTTCTTTTGGATTCTGATATGAATGCAAAGTTAGGTGATTTTGGTTTGGCTAAGCTTTATGATCATGGTGAGAATGCAAGTACAACAAGGGTGGTTGGAACTATGGGGTATTTAGCACCAGAGTTAACAAGAACAGGTAAACCAACTACAAGTTCTGATGTTTTTGCATTTGGGGCATTGTTGTTGGAGGTTGTTTGTGGAAGGAGGCCTATTGAGGCGAAAGCATTGCCGGAGGAGCTTGTTTTGGTGGATTGGGTTTGGGATAAGTGGAGAGTAGGGGAAGTTATGGAGGTTGTGGATAAAAAGTTAGGAGGTGTTTATGATGAAGTGGAGGTTTTGTTGGTGGTTAAGGTGGGTTTGATGTGTTCTGATGAGTTGCCGGGGAGGAGGCCGACGATGAGGCAGGTGGTTAGGTATTTGGAAGGGGAGGTGAAGTTGCCGGAGATTGATGAGTTTGGGGGGAAAAAGGAGAGGTTTTTGTATCGGAGGTCGGAGTTTTTTGAAAGGGAGAATACTTGGTCGTCGGCCGGTGATGACGTGGAGAGTGCGTTTGCATCGTCTCTTCAACTCTCCGGTGGCCGGTAG 1932 0.3866 MAKTPLLFLCIFILLASNSIIQSHSQQDEFFFSGFNEAATNITLNGGAIIEHKGTIRLTNDTERVLGHAFYSNPIQFKNSNNSTKVFSFSTSFAFAIIPQYPKLGGHGFAFTISPSKKLSNGYPSQYLGLLNPHDLGNFSNHLFAVEFDTVQDFEFNDINDNHVGINLNNMVSNKSVKACFFTDGSVQDLNLKSGSVIQAWIDYNSSMNHLEVRLSPTSSKPSSPILSYKVDLTPILQETMFIGFSSSTGLLSSSHYILGWSFKINGESKTLSLKHLPSLSSHNKNSKKSLILEAWELEVGPHRFPYKELKQATKGFKEKNLLGFGGFGKVYKGVIVSSNSKTEIAVKQISHESKQGVQEFISEIETIGKLRHRNLVQLLGWCRKKNDLILVYDYMENGSLDKYIFEKPRRILKWEERFRIIKGVACGLVYLHEEWEQTVIHRDVKAGNVLLDSDMNAKLGDFGLAKLYDHGENASTTRVVGTMGYLAPELTRTGKPTTSSDVFAFGALLLEVVCGRRPIEAKALPEELVLVDWVWDKWRVGEVMEVVDKKLGGVYDEVEVLLVVKVGLMCSDELPGRRPTMRQVVRYLEGEVKLPEIDEFGGKKERFLYRRSEFFERENTWSSAGDDVESAFASSLQLSGGR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01939 643 CDD lectin_legume_LecRK_Arcelin_ConA 29 267 IPR001220 GO:0030246
Trre6g01939 643 PANTHER - 41 596 - -
Trre6g01939 643 CDD STKc_IRAK 323 591 - -
Trre6g01939 643 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 280 IPR013320 -
Trre6g01939 643 ProSiteProfiles Protein kinase domain profile. 317 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01939 643 Pfam Legume lectin domain 28 276 IPR001220 GO:0030246
Trre6g01939 643 Pfam Protein tyrosine and serine/threonine kinase 320 588 IPR001245 GO:0004672|GO:0006468
Trre6g01939 643 Gene3D Transferase(Phosphotransferase) domain 1 396 605 - -
Trre6g01939 643 SUPERFAMILY Protein kinase-like (PK-like) 299 593 IPR011009 -
Trre6g01939 643 SMART serkin_6 317 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01939 643 FunFam L-type lectin-domain containing receptor kinase S.4 26 271 - -
Trre6g01939 643 FunFam L-type lectin-domain containing receptor kinase S.4 396 601 - -
Trre6g01939 643 FunFam Lectin-domain containing receptor kinase A4.3 302 395 - -
Trre6g01939 643 Gene3D - 27 266 - -
Trre6g01939 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Trre6g01939 643 ProSitePatterns Protein kinases ATP-binding region signature. 323 348 IPR017441 GO:0005524
Trre6g01939 643 Gene3D Phosphorylase Kinase; domain 1 302 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01939 Trre-Chr6 16293583 16295598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01939 29 598 Receptor kinase-like Gene Family AT3G55550 57.921 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre6g01939 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01939 - - gmx:100804136 854.744