Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01936 ATGTCTACAGATACAACAACAACAACGACGTCGTATTGGTGTTACAGATGCAGTCGTTTTGTAAGGTTAGCGACACAAGAAACGGTTATTTGTCCCGATTGCGACGGTGGTTTTCTCGAACAAATCGAACAACCGCCGTCACGTTCTCTTCAAATTGATGCTCGCCGGAGACGTTTTCCGGCTGCAGCTATGTACATGATCGGTCAACGTCCCGGTTCAGATCATACTTCTCGACCAACTTCTATCAGAAGAACTCGTCGTAACGGTGGTGAACGGTCACCTTTCAATCCGGTTATAGTCCTCCGTGGCGGTGGAGCAACGGAGGTTACAGAAGCCGGTGGTGCTAACAACGGAGCTGGTGGAGAGAGTCGTGGATTTGAACTTTTTTATGATGATGGTGCTGGTTCTGGTTTAAGACCTTTACCTCCAAGTATGTCAGAGTTTCTTCTTGGATCTGGATTTGATAGATTGTTAGAACAGTTATCTCAGATTGAAATTAATGGAATTTCGAGATTCGAACATCCTCCGGCGTCTAAAGCTGCTGTTGATTCATTACCAACTATTGAAATTGATAATAATCATTTGGAAATGGAACCACACTGTGCAGTTTGTATGGAAGCTTTTGAATTAGGTACTGTTGTTAGAGAAATGCCTTGTAAGCATATTTATCATCCTGATTGTATTTTACCTTGGCTTGCACTTCATAATTCGTGCCCGGTTTGTCGCCATGAATTACCGTCTGATTCTGATGGTGTTGCTAGTAATCAACCACAATTACAGTCACAGTCGCAGTCGCAGTCACAATCGCTTGGTTTGAATGAAGAAGATAGTAATGTTGGGTTGACTATTTGGAGATTGCCGGGTGGTGGTTTTGCTGTGGGGAGATTTTCGGGTGGGAGAAGAGGGGCTGAGAGGGAGCTTCCTGTTGTTTATACTGAAATGGATGGAGGTTTTAATAATGGTGGTGAACCTAGGAGGATTTCTTGGTCTTCAAGAGGGGGTAGAGGGAGGGAGAGAAGTGGCGGTTTGAGAAGGTTTTTCGGGAGTTTCTTTGGTTGTTTTAGTAGTGGTGGAGTTGGGAATCAGCGTACAGTTTCGAGTAGAGAGTCGAGATCAGTGAGGACTAATTCGTCTCATTCTTCAAATATGGATCCTTCTCCGCGTTCGAGAAGGACTTGGTCTATGGATGTAAACAGTGGTATGAGATCATGGTAA 1215 0.4428 MSTDTTTTTTSYWCYRCSRFVRLATQETVICPDCDGGFLEQIEQPPSRSLQIDARRRRFPAAAMYMIGQRPGSDHTSRPTSIRRTRRNGGERSPFNPVIVLRGGGATEVTEAGGANNGAGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGISRFEHPPASKAAVDSLPTIEIDNNHLEMEPHCAVCMEAFELGTVVREMPCKHIYHPDCILPWLALHNSCPVCRHELPSDSDGVASNQPQLQSQSQSQSQSLGLNEEDSNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGGRGRERSGGLRRFFGSFFGCFSSGGVGNQRTVSSRESRSVRTNSSHSSNMDPSPRSRRTWSMDVNSGMRSW 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01936 404 MobiDBLite consensus disorder prediction 249 272 - -
Trre6g01936 404 MobiDBLite consensus disorder prediction 360 404 - -
Trre6g01936 404 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Trre6g01936 404 Pfam Protein of unknown function (DUF1117) 279 381 IPR010543 -
Trre6g01936 404 Pfam zinc-ribbon 10 42 IPR039525 GO:0061630
Trre6g01936 404 SUPERFAMILY RING/U-box 181 248 - -
Trre6g01936 404 MobiDBLite consensus disorder prediction 69 97 - -
Trre6g01936 404 MobiDBLite consensus disorder prediction 247 272 - -
Trre6g01936 404 FunFam E3 ubiquitin-protein ligase RING1-like 163 248 - -
Trre6g01936 404 MobiDBLite consensus disorder prediction 321 340 - -
Trre6g01936 404 SMART ring_2 201 241 IPR001841 -
Trre6g01936 404 CDD RING-H2_RNF126-like 201 242 - -
Trre6g01936 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 248 IPR013083 -
Trre6g01936 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 74 246 - -
Trre6g01936 404 Pfam Ring finger domain 200 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01936 Trre-Chr6 16279745 16280959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01936 140 248 C3H Transcription Factor Family AT5G01980 43.119 2.51e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01936 K11982 - gmx:100807324 525.013