Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01934 ATGAGTTTTGTTTTTCGAGGAGCAAGAGCTGATTTAGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGTGCATTGCGTGTTCATGCAGCGCGTCCTAGTAATTCCAACTCGCTCACTTTTCTCGTAACAGTTCTCCTGTTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGTTAGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTATGCAACATGTCAACAACTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGTCACACAGAACTACGGTTGCATATGCCTCCATCGATAGCACTGGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTGGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCGGATAATGTTTCTACTGCACCTTCGATGACTGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTGCCCAAAAAAGTGGCCCCTCAGTGCAACAAGCATCACCGTCCACTTCTGCTGAGCAGAAGACACAGGATAATTCAAAGGTGGTTGGAAACACGAAAGCCTCCGATGACGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGAGATGTACTTCGTAGCTTGCCCTGCTTGCATCAGTTTCATGCTAATTGTATTGATCCCTGGTTACGGCAACAAGGGACATGCCCTGTCTGCAAATTTCGAGCAGGATCTGGATGGAATGACAGTGGACATCATGATATCGCAGACATGGTTTGA 825 0.463 MSFVFRGARADLENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGAQKSGPSVQQASPSTSAEQKTQDNSKVVGNTKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNDSGHHDIADMV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01934 274 PANTHER TARGET OF ERK KINASE MPK-1 2 260 - -
Trre6g01934 274 CDD RING-H2_PA-TM-RING 213 255 - -
Trre6g01934 274 Pfam Ring finger domain 213 255 IPR001841 -
Trre6g01934 274 SMART ring_2 214 254 IPR001841 -
Trre6g01934 274 MobiDBLite consensus disorder prediction 176 204 - -
Trre6g01934 274 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Trre6g01934 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 260 IPR013083 -
Trre6g01934 274 MobiDBLite consensus disorder prediction 173 204 - -
Trre6g01934 274 SUPERFAMILY RING/U-box 207 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01934 Trre-Chr6 16240106 16243405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01934 1 274 C3H Transcription Factor Family AT3G55530 76.173 1.06e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01934 K16283 - gmx:100777936 449.129