Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01925 ATGGTTTATAATGAAAGCTCTGTCTCCAGTGCCAAGTTTGATGCTATCGCTGATATTCACCCTGATAAAGAGGATATTCGAATTAATGTTAGGGTTCTTCGCTTATGGAAGGTTCCCACATTTCTGAATCCATCCGAAAATGGCTCAATTGAGATGGTTTTGGTTGATGACAAGGGTGGTAAAATTCATGCTACTATAAAGAAGCAGCTGATTTACATGTTTGAAAGGAAGATCGAGGAGGGAAACACATATGATATTTCCAGTTTTGCTGTTTACCCTCAAAGTGGTTCGTATCGCAGTACTCTTCATCCATACAAAATCGTTTTCAAGTTAAAAACAAAGGTTAATTTATCAGAGCATTCGTCTATTACCACTTATGGTCTCACTGTAACCAACATTTCTGATGTGTGTGCTCATACACATGATTATGAGTTTTTGGTTGATGTAATTGGTTATATGACTGGGTTATCTGCTGAAAGAGAGTATTTTCGTGATGGGAAAATTACCAAGATGGTTGTTGCTGAGTTAACTGATCACAGTGGTAAATGTGAGGTTGCTTTGTTTGGGAATTATGCTGAGGATTTGGTAAAGAAAGTGGGTAAGCTTTCTGGTGGGTTGCCTATTGTTGTTGTTCAGTTTGCTAAAGTGAAAATATTCAGAGACAAAGCTTCACTTCAAAATGTGATGAATACAACTAGGATTTTTGTCAATCCTGATATTGCTGAGGTTGAATCTTTTAAAAACAGTGTTGCTGTTCAAGGTCTTGAACTTGATTCGGATGTCCCATTGCTTGGTCAGCCTGCTAAGCCATCTTTTGAGGAGGAGTTTCTCCGTATGCACCCTAAAAGCAATGTTTTTCAGCTTGAAAATTTGGAAGAAGGTGGTGTTTCTACTGTTTGTGCTGAAATTGTTCGTGTTCTTGATGGGAGTGATTGGTGGTATCCAGCATGCAAGTGTCATAGGAGTGTTGTTGCTGACTCTGGTTCTTATTTTTGTAGCTCATGTGATAGGCATGTATTTCATGTTGTGCCAAGGTTTCGTGTGAAAGTTGAGCCAATTGTTGATTTGGGTTCTGATGGAGATGTTAATGAGGTTGATGGTGTGATTGATTCGCAAACAAGTGAGTTCCTCGATGACCTTATCGTGACCCCTACCAAATCTGTTGAGAATTCTGTTGGAGATGATGGCATGGACATCCCTTTAAAGAGGAGCTTTGCAAAGAGTTTTAACTCTAATTTCAAGCGTCAAGGAAATAAGCGTCTCAAACCTGTGAAGATTGAGAAGGATTGA 1290 0.3907 MVYNESSVSSAKFDAIADIHPDKEDIRINVRVLRLWKVPTFLNPSENGSIEMVLVDDKGGKIHATIKKQLIYMFERKIEEGNTYDISSFAVYPQSGSYRSTLHPYKIVFKLKTKVNLSEHSSITTYGLTVTNISDVCAHTHDYEFLVDVIGYMTGLSAEREYFRDGKITKMVVAELTDHSGKCEVALFGNYAEDLVKKVGKLSGGLPIVVVQFAKVKIFRDKASLQNVMNTTRIFVNPDIAEVESFKNSVAVQGLELDSDVPLLGQPAKPSFEEEFLRMHPKSNVFQLENLEEGGVSTVCAEIVRVLDGSDWWYPACKCHRSVVADSGSYFCSSCDRHVFHVVPRFRVKVEPIVDLGSDGDVNEVDGVIDSQTSEFLDDLIVTPTKSVENSVGDDGMDIPLKRSFAKSFNSNFKRQGNKRLKPVKIEKD 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01925 429 SUPERFAMILY Nucleic acid-binding proteins 292 350 IPR012340 -
Trre6g01925 429 CDD RPA1_DBD_A_like 27 115 - -
Trre6g01925 429 PANTHER OS03G0429900 PROTEIN 15 336 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre6g01925 429 Gene3D - 276 357 IPR012340 -
Trre6g01925 429 SUPERFAMILY Nucleic acid-binding proteins 12 119 IPR012340 -
Trre6g01925 429 Gene3D - 122 257 IPR012340 -
Trre6g01925 429 Pfam Domain of unknown function DUF223 51 125 IPR003871 -
Trre6g01925 429 CDD RPA1_DBD_B_like 148 250 - -
Trre6g01925 429 Gene3D - 12 117 IPR012340 -
Trre6g01925 429 SUPERFAMILY Nucleic acid-binding proteins 129 257 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01925 Trre-Chr6 16073748 16076022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01925 28 351 Core DNA Replication Machinery Family AT4G19130 23.563 4.23e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01925 - - tpra:123904946 470.314