Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01922 ATGAATAGAAGGTCGGAACTTGAAGATGCTGCCACACTCTTTTCACCAAAGGGGTTTTGCTTTGATCTCAAACCAGAGCTGCGCCTTTTTCCATCCAAAGTCATGGCTTTGACCCTTCACGCTAACCAGGGAAACAAAAATGCTTACAAGACACTGATTGCCGCTGAATATGTCGGTGTCCAAGTTCAACAGGTTCCAGATTTTCAGATGGGTGTCTCCAACAAAACTCCTCAATTTCTCAAGATGAACCCTATTGGAAAGGTTCCTGTCTTGGAAACCCCTGATGGTCCCATCTTTGAGAGCAATGCCATTGCTCGTTATGTTGCCCGATTGGGTGAAAACAATTTGTTTGGATCATCTCCCATTGATCAGGCCCACATTGACCAGTGGATTGATTTTTCTTCTTTGGAGATTGATGACAATATTATGAAGTTATACCGCCCAAGACGTGGATTTTCCCCTTACTTTCCTCCAGTAGAGGAGGCTGCAATCTCTGCATTGAAGAGAGCATTTGAGGCTTTGAACACTCACCTTGCCCACAATACTTACCTAGTTGGGGATTCTGTTACCCTTGCTGACATTATAGCAATAAACAACTTGTATTTGGGTTTCACTTATCTCTTCGTCAAGAGCTTCACCTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACCTTGGTCAACCAGCCAAATTTCAGAAAGATACTAGGCCAGGTTAAGCAGACCGAAGCTATGCCACCTATTCCATCTGCAAAGAAGCCTACCCAACCTAAGGAATCTAAGCCCAAATCTAAAGAAGAACCAAAGAAAGCGGCTAAAGCAGAGCCCGAAAAGCCCAAAGAAGAAGCTGAAGAGGAGGCTCCCAAGCCCAAACCCAAGAATCCTCTTGATCTTCTTCCTCCAAGTAAGATGGTATTGGATGACTGGAAAAGACTTTACTCTAACACTAAGACTAACTTCCGTGAGGTTGCAGTCAAAGGATTCTGGGACATGTATGATCCAGAGGGATATTCGCTCTGGTTCTGTGACTACAAATACAATGATGAGAACACGGTTTCTTTCGTGACACTGAACAAGGTTGGAGGATTTCTCCAGAGGATGGATCTTGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCGGAGCCTCCATTTAAGGTGAAGGGATTGTGGCTTTTCCGTGGACAAGAGATTCCAAAATTTGTCATGGATGAATGCTATGATATGGAGCTGTACGAGTGGACCAAGGTTGACATCTCCGACGAAGCTCAAAAAGAGCGTGCCAGTCAGATGATTGAAGATGCTGAACCATTTGAGGGCGAGGCTCTATTGGATGCCAAGTGCTTTAAGTGA 1359 0.4444 MNRRSELEDAATLFSPKGFCFDLKPELRLFPSKVMALTLHANQGNKNAYKTLIAAEYVGVQVQQVPDFQMGVSNKTPQFLKMNPIGKVPVLETPDGPIFESNAIARYVARLGENNLFGSSPIDQAHIDQWIDFSSLEIDDNIMKLYRPRRGFSPYFPPVEEAAISALKRAFEALNTHLAHNTYLVGDSVTLADIIAINNLYLGFTYLFVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAMPPIPSAKKPTQPKESKPKSKEEPKKAAKAEPEKPKEEAEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAVKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVMDECYDMELYEWTKVDISDEAQKERASQMIEDAEPFEGEALLDAKCFK 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01922 452 SUPERFAMILY GST C-terminal domain-like 107 247 IPR036282 -
Trre6g01922 452 CDD GST_N_EF1Bgamma 37 111 - -
Trre6g01922 452 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 35 116 IPR004045 -
Trre6g01922 452 SFLD Glutathione Transferase (cytosolic) 37 223 IPR040079 -
Trre6g01922 452 SUPERFAMILY eEF1-gamma domain 292 452 IPR036433 GO:0003746|GO:0006414
Trre6g01922 452 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 120 248 IPR010987 -
Trre6g01922 452 FunFam Elongation factor 1 gamma 113 248 - -
Trre6g01922 452 SUPERFAMILY Thioredoxin-like 30 111 IPR036249 -
Trre6g01922 452 SMART EF1G_2 291 399 IPR001662 GO:0003746|GO:0006414
Trre6g01922 452 FunFam Elongation factor 1B gamma 35 108 - -
Trre6g01922 452 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 35 452 IPR044628 GO:0004364
Trre6g01922 452 MobiDBLite consensus disorder prediction 243 300 - -
Trre6g01922 452 Gene3D - 113 247 - -
Trre6g01922 452 Pfam Glutathione S-transferase, C-terminal domain 161 230 IPR004046 -
Trre6g01922 452 CDD GST_C_EF1Bgamma_like 123 245 - -
Trre6g01922 452 MobiDBLite consensus disorder prediction 256 292 - -
Trre6g01922 452 Pfam Glutathione S-transferase, N-terminal domain 35 110 IPR004045 -
Trre6g01922 452 Gene3D Glutaredoxin 33 108 - -
Trre6g01922 452 FunFam Elongation factor 1-gamma 1 292 452 - -
Trre6g01922 452 SFLD Main (cytGST) 37 223 - -
Trre6g01922 452 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 292 452 IPR001662 GO:0003746|GO:0006414
Trre6g01922 452 Pfam Elongation factor 1 gamma, conserved domain 291 399 IPR001662 GO:0003746|GO:0006414
Trre6g01922 452 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 292 452 IPR036433 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01922 Trre-Chr6 16050429 16054401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01922 35 452 Eukaryotic Initiation Factors Gene Family AT1G57720 74.940 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01922 K03233 - gmx:100787125 670.233