Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01913 ATGCTATATATGGACACCATTTATAAAGAACCTAAGATTCTGGATAGAGTTCAACTAACTAAAAAGAGTGATGTATACAAATTTGGTGTTGTTCTTCTGGAAATTATGTTAGGGAAACAAGGCCAATATTCACCGCGTGAAGCAATGAAAGTAGCTCAGATTGTAAATAAATGCCTGTCTGATATGCCAACTTGTAGACCAAACATGGACGAAGTGGTGAGATTATTGGAGCTACTTCAGGATTCCAAGGACACAGTTGGTGGAGTGGACAGCCCTCAGTCTCTGGACCCGGCTCATGTGCAGTAA 306 0.4085 MLYMDTIYKEPKILDRVQLTKKSDVYKFGVVLLEIMLGKQGQYSPREAMKVAQIVNKCLSDMPTCRPNMDEVVRLLELLQDSKDTVGGVDSPQSLDPAHVQ 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01913 101 PANTHER OS01G0588500 PROTEIN-RELATED 41 80 - -
Trre6g01913 101 Gene3D Transferase(Phosphotransferase) domain 1 3 91 - -
Trre6g01913 101 SUPERFAMILY Protein kinase-like (PK-like) 6 84 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01913 Trre-Chr6 15999081 15999608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01913 8 85 Receptor kinase-like Gene Family AT5G58300 28.448 1.01e-09 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre6g01913 PK_Tyr_Ser-Thr 7.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01913 - - gmx:100800735 84.3445