Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01910 ATGGCCGAGCTGATTGCTGGAGCATTTCTTTCTTCTGTCTTTCAAGTCACTCTTGAGAGGTTTGCCTCAAGAGATTTCAAAGACCTATTCAATAAAAGATTGGTAGAAAAACTTGAAATCACATTGAATTCTATCAATCAAGTGTTGGATGATGCAGAGACAAAGCAGTACCAAAACCAAAACGTGAAGAATTGGCTTGATCATCTAAAACACGAGATATATGAAGTAGATCAATTGTTAGATGAGATTGCTACATATGCACAACGAAAGAGCAAGGTTCAACTCTTCCTTTCAGCTTTGACTAATCGATTTGAATCTAGGATCAAAGATTTGCTAGACAAGCTAAAATTTCTTGCAGAGCAAAAGGATGTGGTCAAAGCTGAGAATCCTATACATAATGAGGTAAAAACTTCTAGGATTGAGGGTGAGATATTGGAATCCAACAATTTGAAGTGTTTCACATTGAATGAGGTAAAAACTGCTACAAGGAACTTTCATCCAGATGGTCTAGTGGGTGAAGGTGGATTTGGTTCTGTATTTAAGGGGTGGATCGATGATGAACACACACTAGCTCCTACTAAACCAGGTACTGATTTTGTCATTGCTGTGAAGAGGCTTTACCAAGAAACTAACAAAGGACTCAGTAAATGGTTGACAGAAATCAATTACCTTGGACAGCTTCGTCATCCTAATCTTGTGAAACTAATTGGTTATTGTTTCGAGGATGAACACCAGATTTTAGTATATGAGTTTTTGACCAAGGGAAGTTTGGATAATCATTTGTTTGGAAGAGTTTCTAACTTTCAACCACTCTCTTGGAAAATCCGTATGAAGATAGCTCTTGATGTTGCTAAGGGTCTTGCGTTTCTTCATAGAGATGAAGTCGGTGTGATATATCGATACTTCAAAACTTCTAAAATCTTGATTGACTCTAATTACAATGCAAAATTATCTGTTTTTGGGTTGGAAAAAGATAGACCTGAAGATGATACAATGGACTCAGAAGTGGTATTTATAGGCACCACAGTTTATATAGCACCTGAGTATCTACTCAAAGATCATTCCTTGCACATAGTGAATGAGCATTTTGGAGTTGGATAG 1101 0.3706 MAELIAGAFLSSVFQVTLERFASRDFKDLFNKRLVEKLEITLNSINQVLDDAETKQYQNQNVKNWLDHLKHEIYEVDQLLDEIATYAQRKSKVQLFLSALTNRFESRIKDLLDKLKFLAEQKDVVKAENPIHNEVKTSRIEGEILESNNLKCFTLNEVKTATRNFHPDGLVGEGGFGSVFKGWIDDEHTLAPTKPGTDFVIAVKRLYQETNKGLSKWLTEINYLGQLRHPNLVKLIGYCFEDEHQILVYEFLTKGSLDNHLFGRVSNFQPLSWKIRMKIALDVAKGLAFLHRDEVGVIYRYFKTSKILIDSNYNAKLSVFGLEKDRPEDDTMDSEVVFIGTTVYIAPEYLLKDHSLHIVNEHFGVG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01910 366 FunFam Serine/threonine-protein kinase BIK1 132 251 - -
Trre6g01910 366 ProSitePatterns Protein kinases ATP-binding region signature. 171 204 IPR017441 GO:0005524
Trre6g01910 366 Gene3D Transferase(Phosphotransferase) domain 1 252 358 - -
Trre6g01910 366 Gene3D Phosphorylase Kinase; domain 1 140 251 - -
Trre6g01910 366 Pfam Rx N-terminal domain 9 91 IPR041118 -
Trre6g01910 366 Pfam Protein tyrosine and serine/threonine kinase 171 352 IPR001245 GO:0004672|GO:0006468
Trre6g01910 366 PANTHER OS01G0588500 PROTEIN-RELATED 114 354 - -
Trre6g01910 366 ProSiteProfiles Protein kinase domain profile. 165 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01910 366 SUPERFAMILY Protein kinase-like (PK-like) 140 352 IPR011009 -
Trre6g01910 366 Gene3D - 31 138 - -
Trre6g01910 366 Coils Coil 35 55 - -
Trre6g01910 366 Coils Coil 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01910 Trre-Chr6 15978455 15984056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01910 128 349 Glycoside Hydrolase AT3G07070 38.222 9.16e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre6g01910 PK_Tyr_Ser-Thr 1.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01910 - - gmx:106795104 310.071