Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01909 ATGGCCGAGCTGATTGCTGGAGCATTTCTTTCTTCTGTCTTTCAAGTCACTCTTGAGAGGTTTGCCTCAAGAGATTTCAAAGACCTATTCAATAAAAGATTGGTAGAAAAACTTGAAATCACATTGAATTCTATCAATCAAGTGTTGGATGATGCAGAGACAAAGCAGTACCAAAACCAAAACGTGAAGAATTGGCTTGATCATCTAAAACACGAGATATATGAAGTAGATCAATTGTTAGATGAGATTGCTACATATGCACAACGAAAGAGCAAGGTTCAACTCTTCCTTTCAGCTTTGACTAATCGATTTGAATCTAGGATCAAAGATTTGCTAGACAAGCTAAAATTTCTTGCAGAGCAAAAGGATGTGGTCAAAGCTGAGAATCCTATACATAATGAGGTAAAAACTTCTAGGATTGAGGGTGAGATATTGGAATCCAACAATTTGAAGTGTTTCACATTGAATGAGGTAAAAACTGCTACAAGGAACTTTCATCCAGATGGTCTAGTGGGTGAAGGTGGATTTGGTTCTGTATTTAAGGGGTGGATCGATGATGAACACACACTAGCTCCTACTAAACCAGGTACTGATTTTGTCATTGCTGTGAAGAGGCTTTACCAAGAAACTAACAAAGGACTCAGTAAATGGTTGACAGAAATCAATTACCTTGGACAGCTTCGTCATCCTAATCTTGTGAAACTAATTGGTTATTGTTTCGAGGATGAACACCAGATTTTAGTATATGAGTTTTTGACCAAGGGAAGTTTGGATAATCATTTGTTTGGAAGAGTTTCTAACTTTCAACCACTCTCTTGGAAAATCCGTATGAAGATAGCTCTTGATGTTGCTAAGGGTCTTGCGTTTCTTCATAGAGATGAAGTCGGTGTGATATATCGATACTTCAAAACTTCTAAAATCTTGATTGACTCTAATTACAATGCAAAATTATCTGTTTTTGGGTTGGAAAAAGATAGACCTGAAGATGATACAATGGACTCAGAAGTGGTATTTATAGGCACCACAGTTTATATAGCACCTGAGTATCTACTCAAAGTCCGCCTAACAAAAAAGATCGACATGTATAGTTTCGGGGTTGTTCTCTTGGAAGTTATGTCAGGCAAACGTGCATTCGATAGAAAAAGGCCACCTGAGGAACAAAATCTAGTTGAATGGGCTAAGCCATTACTCGTCAGCAAACGTAAGATCTCTAAAGTCATTGATTCCCATATACAAGGTCAGTATTCGTCGCGTGAAGTAATGAAAGTAGCTTGCATTATAATTCAATGTTTGTCCGGAAGACCGAAATATAGACCAAACATAGATGAAGTGATGAGATCATTGGAGCAACTTCATGATTCCAATGACATAGTTGATGGAGTGGGGAACTCTCAATCTCCACATCAAACAATCAACCATCAAAACAAATGGTCATATTTCAAGCAGCGGTGGTTTAGGTCATGGAAAAAGTGTTAA 1476 0.3774 MAELIAGAFLSSVFQVTLERFASRDFKDLFNKRLVEKLEITLNSINQVLDDAETKQYQNQNVKNWLDHLKHEIYEVDQLLDEIATYAQRKSKVQLFLSALTNRFESRIKDLLDKLKFLAEQKDVVKAENPIHNEVKTSRIEGEILESNNLKCFTLNEVKTATRNFHPDGLVGEGGFGSVFKGWIDDEHTLAPTKPGTDFVIAVKRLYQETNKGLSKWLTEINYLGQLRHPNLVKLIGYCFEDEHQILVYEFLTKGSLDNHLFGRVSNFQPLSWKIRMKIALDVAKGLAFLHRDEVGVIYRYFKTSKILIDSNYNAKLSVFGLEKDRPEDDTMDSEVVFIGTTVYIAPEYLLKVRLTKKIDMYSFGVVLLEVMSGKRAFDRKRPPEEQNLVEWAKPLLVSKRKISKVIDSHIQGQYSSREVMKVACIIIQCLSGRPKYRPNIDEVMRSLEQLHDSNDIVDGVGNSQSPHQTINHQNKWSYFKQRWFRSWKKC 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01909 491 Pfam Rx N-terminal domain 9 91 IPR041118 -
Trre6g01909 491 SUPERFAMILY Protein kinase-like (PK-like) 155 454 IPR011009 -
Trre6g01909 491 ProSitePatterns Protein kinases ATP-binding region signature. 171 204 IPR017441 GO:0005524
Trre6g01909 491 Gene3D Transferase(Phosphotransferase) domain 1 252 468 - -
Trre6g01909 491 PANTHER OS01G0588500 PROTEIN-RELATED 113 452 - -
Trre6g01909 491 Gene3D Phosphorylase Kinase; domain 1 141 251 - -
Trre6g01909 491 Gene3D - 30 137 - -
Trre6g01909 491 ProSiteProfiles Protein kinase domain profile. 165 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01909 491 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 252 460 - -
Trre6g01909 491 Coils Coil 35 55 - -
Trre6g01909 491 Pfam Protein tyrosine and serine/threonine kinase 171 448 IPR001245 GO:0004672|GO:0006468
Trre6g01909 491 Coils Coil 101 128 - -
Trre6g01909 491 FunFam Serine/threonine-protein kinase BIK1 132 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01909 Trre-Chr6 15978455 15984550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01909 148 482 Receptor kinase-like Gene Family AT3G58690 37.719 5.71e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre6g01909 PK_Tyr_Ser-Thr 6.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01909 - - gmx:100800735 444.506