Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01908 ATGGCCGAGCTGATTGCTGGAGCATTTCTTTCTTCTGTCTTTCAAGTCACTCTTGAGAGGTTTGCCTCAAGAGATTTCAAAGACCTATTCAATAAAAGATTGGTAGAAAAACTTGAAATCACATTGAATTCTATCAATCAAGTGTTGGATGATGCAGAGACAAAGCAGTACCAAAACCAAAACGTGAAGAATTGGCTTGATCATCTAAAACACGAGATATATGAAGTAGATCAATTGTTAGATGAGATTGCTACATATGCACAACGAAAGAGCAAGGTTCAACTCTTCCTTTCAGCTTTGACTAATCGATTTGAATCTAGGATCAAAGATTTGCTAGACAAGCTAAAATTTCTTGCAGAGCAAAAGGATGTGGTCAAAGCTGAGAATCCTATACATAATGAGGTAAAAACTTCTAGGATTGAGGGTGAGATATTGGAATCCAACAATTTGAAGTGTTTCACATTGAATGAGGTAAAAACTGCTACAAGGAACTTTCATCCAGATGGTCTAGTGGGTGAAGGTGGATTTGGTTCTGTATTTAAGGGGTGGATCGATGATGAACACACACTAGCTCCTACTAAACCAGGTACTGATTTTGTCATTGCTGTGAAGAGGCTTTACCAAGAAACTAACAAAGGACTCAGTAAATGGTTGACAGAAATCAATTACCTTGGACAGCTTCGTCATCCTAATCTTGTGAAACTAATTGGTTATTGTTTCGAGGATGAACACCAGATTTTAGTATATGAGTTTTTGACCAAGGGAAGTTTGGATAATCATTTGTTTGGAACCAATGTTTGTGGAGCAGGAGTTTCTAACTTTCAACCACTCTCTTGGAAAATCCGTATGAAGATAGCTCTTGATGTTGCTAAGGGTCTTGCGTTTCTTCATAGAGATGAAGTCGGTGTGATATATCGATACTTCAAAACTTCTAAAATCTTGATTGACTCTAATTACAATGCAAAATTATCTGTTTTTGGGTTGGAAAAAGATAGACCTGAAGATGATACAATGGACTCAGAAGTGGTATTTATAGGCACCACAGTTTATATAGCACCTGAGTATCTACTCAAAGTCCGCCTAACAAAAAAGATCGACATGTATAGTTTCGGGGTTGTTCTCTTGGAAGTTATGTCAGGCAAACGTGCATTCGATAGAAAAAGGCCACCTGAGGAACAAAATCTAGTTGAATGGGCTAAGCCATTACTCGTCAGCAAACGTAAGATCTCTAAAGTCATTGATTCCCATATACAAGGTCAGTATTCGTCGCGTGAAGTAATGAAAGTAGCTTGCATTATAATTCAATGTTTGTCCGGAAGACCGAAATATAGACCAAACATAGATGAAGTGATGAGATCATTGGAGCAACTTCATGATTCCAATGACATAGTTGATGGAGTGGGGAACTCTCAATCTCCACATCAAACAATCAACCATCAAAACAAATGGTCATATTTCAAGCAGCGGTGGTTTAGGTCATGGAAAAAGTGTTAA 1494 0.3788 MAELIAGAFLSSVFQVTLERFASRDFKDLFNKRLVEKLEITLNSINQVLDDAETKQYQNQNVKNWLDHLKHEIYEVDQLLDEIATYAQRKSKVQLFLSALTNRFESRIKDLLDKLKFLAEQKDVVKAENPIHNEVKTSRIEGEILESNNLKCFTLNEVKTATRNFHPDGLVGEGGFGSVFKGWIDDEHTLAPTKPGTDFVIAVKRLYQETNKGLSKWLTEINYLGQLRHPNLVKLIGYCFEDEHQILVYEFLTKGSLDNHLFGTNVCGAGVSNFQPLSWKIRMKIALDVAKGLAFLHRDEVGVIYRYFKTSKILIDSNYNAKLSVFGLEKDRPEDDTMDSEVVFIGTTVYIAPEYLLKVRLTKKIDMYSFGVVLLEVMSGKRAFDRKRPPEEQNLVEWAKPLLVSKRKISKVIDSHIQGQYSSREVMKVACIIIQCLSGRPKYRPNIDEVMRSLEQLHDSNDIVDGVGNSQSPHQTINHQNKWSYFKQRWFRSWKKC 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01908 497 Gene3D Transferase(Phosphotransferase) domain 1 252 474 - -
Trre6g01908 497 ProSitePatterns Protein kinases ATP-binding region signature. 171 204 IPR017441 GO:0005524
Trre6g01908 497 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 252 466 - -
Trre6g01908 497 Gene3D Phosphorylase Kinase; domain 1 141 251 - -
Trre6g01908 497 FunFam Serine/threonine-protein kinase BIK1 132 251 - -
Trre6g01908 497 Pfam Rx N-terminal domain 9 91 IPR041118 -
Trre6g01908 497 SUPERFAMILY Protein kinase-like (PK-like) 151 459 IPR011009 -
Trre6g01908 497 ProSiteProfiles Protein kinase domain profile. 165 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01908 497 PANTHER OS01G0588500 PROTEIN-RELATED 114 458 - -
Trre6g01908 497 Gene3D - 30 116 - -
Trre6g01908 497 Pfam Protein tyrosine and serine/threonine kinase 171 454 IPR001245 GO:0004672|GO:0006468
Trre6g01908 497 Coils Coil 35 55 - -
Trre6g01908 497 Coils Coil 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01908 Trre-Chr6 15978455 15984550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01908 148 488 Receptor kinase-like Gene Family AT3G58690 37.572 1.35e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre6g01908 PK_Tyr_Ser-Thr 2.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01908 - - gmx:100800735 435.647