Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01907 ATGTTCATGGCTTGCTGCTTTAGTTCAAAGGTCAAAGCTGACTGTCCTACACATAATGGTTTGAATGAAGAGGATGTTTTGAATGGTTTATGCAAAAAGGCATGTTGTTCCTCTATGACTGACAGTGAGATATTTCAATCCAATAACTTGAAGTGTTTTACATTCAATGAGCTAAAAACTGCTACAAGGAACTTTCGTCCAAGTGGTCTAGTCAGTGAAAGTGGGTTTGGTTGCGTATATAAGGGGTGGATCGATGAAAACACACTAGCCCCTACTAAACTAGGAACTGGTTTTGTCGTTGCTGTGAAGACGCTTAACCAAGAAAACAACCAGGGACAAAGTGAATGGTTGACAAAAATCAATTACTTAGGACAGCTGCATCATCCAAATCTTGTGAAATTGATTGGTTACTGCGTCGAGGATAACAATCGGATTTTGGTATATGAATTTTTTACCAAGGGAAGTTTGGACAATCATCTGTTTAGAAGGGTTTCTAACTTTGAGCCACTCTCTTGGAAAATTCGAATGAAGATAGCTCTTGACGCTGCTAAGGGTCTTGCATTTCTTCACAGTAATGAAGTGGAAGTGATACATGGAGGCTTCAAAACTTCTAAGATCATGATTGATTCGAACTATAATGCGAAACTATCCGATTTTGGGTTGAAAAAATATGGATCAGATCATAGGATCGTAACATATCCACAGATTTACGCAGCACGGGAGTTTAGAGAAACAGGTAATCTAAGCAAAAAGAGTGATGTATACAGTTTTGGAGTTGTTCTCCTTGAAATTATGTCAGGAAAACGTGCATTGGATAAAAACAGGCCATCTGTGGAACAAAATTTAGTTGCATGGGCAAAACCATTACTCGTAAGCAAACACAAAATCTCTCGAGCCATTGATGCTCGTTTAGAAGGCCAATATTCATCGGAAGAAGCAATGAAAGTAGGTCACATTGTAATTAAATGTCTGTCTGAAAGACCAGATTATAGACCGAACATAGATGAGGTGGTGAGATCATTGGAACAACTTCAGGATTCCAATGACACAATTGGTGGAGTAGGGAGCTCTTAA 1074 0.3883 MFMACCFSSKVKADCPTHNGLNEEDVLNGLCKKACCSSMTDSEIFQSNNLKCFTFNELKTATRNFRPSGLVSESGFGCVYKGWIDENTLAPTKLGTGFVVAVKTLNQENNQGQSEWLTKINYLGQLHHPNLVKLIGYCVEDNNRILVYEFFTKGSLDNHLFRRVSNFEPLSWKIRMKIALDAAKGLAFLHSNEVEVIHGGFKTSKIMIDSNYNAKLSDFGLKKYGSDHRIVTYPQIYAAREFRETGNLSKKSDVYSFGVVLLEIMSGKRALDKNRPSVEQNLVAWAKPLLVSKHKISRAIDARLEGQYSSEEAMKVGHIVIKCLSERPDYRPNIDEVVRSLEQLQDSNDTIGGVGSS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01907 357 Gene3D Transferase(Phosphotransferase) domain 1 151 352 - -
Trre6g01907 357 ProSiteProfiles Protein kinase domain profile. 65 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01907 357 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 151 352 - -
Trre6g01907 357 Gene3D Phosphorylase Kinase; domain 1 39 150 - -
Trre6g01907 357 FunFam Serine/threonine-protein kinase BIK1 32 150 - -
Trre6g01907 357 PANTHER OS01G0588500 PROTEIN-RELATED 39 345 - -
Trre6g01907 357 SUPERFAMILY Protein kinase-like (PK-like) 43 346 IPR011009 -
Trre6g01907 357 Pfam Protein tyrosine and serine/threonine kinase 73 341 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01907 Trre-Chr6 15968847 15971020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01907 41 349 Glycoside Hydrolase AT3G07070 40.881 1.62e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre6g01907 PK_Tyr_Ser-Thr 2.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01907 - - gmx:100800735 464.922