Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01899 ATGGACACTCCTCATTCACCTTCTTCCTGTTCATCTTCTTCATCCAACTGTTCATTTGAAGGACACGCCACCGACACAATCTATTTAGAAACGGAGGAGCCACAAACGCCGTTAGCCGTTCGACGTGCTCTTCAGCTTCTCAAATCCGGCGTACCGGAGTTACGGATTCAAGCCGCGCGTGATATTCGGAAACTCACCAAAACTTCACACCGTTGTCGGCGTCAGCTCTCTGAAGCTGTCGGTCCACTCGTTTCTATGCTCCGTGTCGACTCAACCGAGTCACATGAACCTGCGCTCCTCGCTTTGCTTAATCTCGCTGTTAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCAGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCACAAAATCCAAATCTGCAGGCGTCTGCAACTGCAGCTTTGCTCACACTATCAGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGCGCCATTCCCCTTCTTGTGGAGATTCTTAAAGACGGAAGCCCACAGGCAAAGGCCGATGCAGTTATGGCTCTCGCTAATTTATCAACATATCCTGGTATTCTTAGCATTATTCTCGAAACAAATCCAATCCCTTTCATTGTTGATATCCTCAAAACTTGCAAAAAGTCCTCAAAAACAGCTGAAAAATGTTGTGCTTTGATAGAACCTTTGGTGGATTACGAAGAATGCAGAACTTCCTTGACATCTGAGGAAGGTGGGATTCTCTCAGTTGTGGAGGTTCTCGAAAATGGCACTCTCCAAAGTAGGGAGCACGCTGTTGGAGCACTATTGACAATGTGCCAAAGCGATCGATGTAAATACAGGGAACCAATTCTTAAAGAAGGTGTCATTCCAGGACTACTCGAGCTCACTGTTCAAGGAACACCAAAGTCTCAGACAAAAGCGCGCACACTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATTCAACCCAACACTCTTGAGAATATAGTATGCAACATCATATCTCAGATTGATGGGGATGAACAATCTGGTAAAGCAAAGAAGATACTGGCTGAGATGGTCCAAGTTAGCATGGAGCAGAGTCTGAGACATTTACAGCAAAGGGCGCTCGTATGCACCCCAAATGATCTTCCCATAGCTGGCTGTACTTCTGAAGTTTCTTTCAAGTAA 1185 0.4464 MDTPHSPSSCSSSSSNCSFEGHATDTIYLETEEPQTPLAVRRALQLLKSGVPELRIQAARDIRKLTKTSHRCRRQLSEAVGPLVSMLRVDSTESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSQNPNLQASATAALLTLSASSTNKPIISACGAIPLLVEILKDGSPQAKADAVMALANLSTYPGILSIILETNPIPFIVDILKTCKKSSKTAEKCCALIEPLVDYEECRTSLTSEEGGILSVVEVLENGTLQSREHAVGALLTMCQSDRCKYREPILKEGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPNTLENIVCNIISQIDGDEQSGKAKKILAEMVQVSMEQSLRHLQQRALVCTPNDLPIAGCTSEVSFK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01899 394 Gene3D - 199 372 IPR011989 -
Trre6g01899 394 PANTHER U BOX DOMAIN-CONTAINING 39 323 - -
Trre6g01899 394 Pfam Armadillo/beta-catenin-like repeat 110 148 IPR000225 GO:0005515
Trre6g01899 394 SMART arm_5 66 107 IPR000225 GO:0005515
Trre6g01899 394 SMART arm_5 150 190 IPR000225 GO:0005515
Trre6g01899 394 SMART arm_5 109 149 IPR000225 GO:0005515
Trre6g01899 394 FunFam U-box domain-containing protein 4 22 376 - -
Trre6g01899 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Trre6g01899 394 SUPERFAMILY ARM repeat 40 344 IPR016024 -
Trre6g01899 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 189 IPR000225 GO:0005515
Trre6g01899 394 Gene3D - 32 198 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01899 Trre-Chr6 15903968 15907278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01899 40 317 U-box Gene Family AT2G23140 32.143 5.94e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01899 - - gmx:100809684 628.246