Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01898 ATGATCTGGGAATTTGGTTTTTTATGTATTGGAAAAAACCCTTCAAAAAGAAACTTAGATAGTGATTACCAAAACGATGAAAATGGTGACAAAAGAATGAATTTTGAGCACAACAAAGCTTGGTTGTTAGCTGAGTCTGGTGGGTGTGGAGCAGAATTGAACAATGCTGATCCTCAATCTGTTCATTCTTCTTTCAGATTTAGTTTCTGTTCTCAAGTTGAGTTGGAGTCTTTGAATTTGAGTTCTTCTTCTGCTGCAACTGTTTTGATGGTGAATTTGGATAATGGAGTTAGTGAATCTCTTGTTAAAGAGTTGAAAGTGAGGAGAATTGAGTCTTTGGAGAAGACTATTTCTCCTGTTGCTCACTCTTTGATTAGGTTTAGCTATGGTGAAATTGTCAATGCTACTAGGAATTTCTCCAAAGGTAGGGTGTTGGGGAGAGGTGCATTGAGCTGTGTTTATAGGGGAAGAGTTGGACTTTTGAGAACTGTTGTAGCAATTAAACAGTTGGACAAAGAAGATAAGGAGTCTGCAAAAGCCTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAATCCAAATGTTGTTCCACTTGTTGGTTTTTGTATCGACTCTGAGGAGGGTTTGTTTTTGGTCTACAAGTATGTCTCGGGTGGAAGCTTGGAGCGACACTTGCATGGGAGGAAGAAAGGTGGCAACGGTAATTCAACACTTCCATGGTCTGTGAGGTACAAGGTTGCAATTGGGATTGCAGAGGCCATAGCTTATCTGCATAGTGGAACTGAAAGATGTGTTGTTCATAGAGACATTAAACCCTCTAACATTCTGCTTTCTTCTAAGAAGACTCCAAAGCTATGTGATTTCGGATTAGCAACATGGACATCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTTAAAGGAACATTTGGATATTTGGCTCCAGAGTATTTCCAACATGGGAAAATATCCGATAAGACTGATGTTTACGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGCCGGAAACCAATTGAAACGAAAAGGTCTCCAGGAGAGGAGAATTTAGTCTTATGGGCTAAACCTTATCTACAAAAGGGGAAAGGAGCCATTGAAGAGTTGCTTGATCCTCAACTGAAGTGCAATTTGCGATTCTCAAATCAAATTGGGAGAATGATTGAAGCAGCTGCTGCTTGTGTAACAAATGAAGAATCTAGGAGACCTGGCATACATGAGGTTATCGCAATACTGAAAGGTGAAGAAGAACCTGTTTTCTCTAAAAAAAAAAAGTCGAGTTTTCTTGGGAATGGATGCGTGATTGATTGTTATTCTCAACTACAACAATCGAGCGAGATGAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTTCAGAGTTTGAGGATGATGATTATCTCTATGTATGTTAA 1434 0.3926 MIWEFGFLCIGKNPSKRNLDSDYQNDENGDKRMNFEHNKAWLLAESGGCGAELNNADPQSVHSSFRFSFCSQVELESLNLSSSSAATVLMVNLDNGVSESLVKELKVRRIESLEKTISPVAHSLIRFSYGEIVNATRNFSKGRVLGRGALSCVYRGRVGLLRTVVAIKQLDKEDKESAKAFCRELMIASSLHNPNVVPLVGFCIDSEEGLFLVYKYVSGGSLERHLHGRKKGGNGNSTLPWSVRYKVAIGIAEAIAYLHSGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKISDKTDVYAFGVVLLELITGRKPIETKRSPGEENLVLWAKPYLQKGKGAIEELLDPQLKCNLRFSNQIGRMIEAAAACVTNEESRRPGIHEVIAILKGEEEPVFSKKKKSSFLGNGCVIDCYSQLQQSSEMKSHLALAMLGVSEFEDDDYLYVC 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01898 477 Gene3D Phosphorylase Kinase; domain 1 123 216 - -
Trre6g01898 477 PANTHER OS08G0249100 PROTEIN 95 436 IPR046958 -
Trre6g01898 477 ProSiteProfiles Protein kinase domain profile. 139 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01898 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Trre6g01898 477 SMART serkin_6 139 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01898 477 Gene3D Transferase(Phosphotransferase) domain 1 217 436 - -
Trre6g01898 477 FunFam probable serine/threonine-protein kinase PBL7 100 216 - -
Trre6g01898 477 FunFam Putative receptor-like serine/threonine-protein kinase 217 435 - -
Trre6g01898 477 Pfam Protein kinase domain 140 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01898 477 SUPERFAMILY Protein kinase-like (PK-like) 119 419 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01898 Trre-Chr6 15863684 15866608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01898 127 422 Trihelix Transcription Factor Family AT1G70460 43.289 2.63e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre6g01898 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01898 - - psat:127083811 850.506