Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01897 ATGGAGTGTGAAACTGAAACCTCCACTGATACAACCAACAACATTTCCAACACACATTCATCATCTTCACTTGTTTTTTCTCACAACAACAACAACAAAAACATCAAAATTAGAACCTTTTTAAGAAAAATGATCTGGGAATTTGGTTTTTTATGTATTGGAAAAAACCCTTCAAAAAGAAACTTAGATAGTGATTACCAAAACGATGAAAATGGTGACAAAAGAATGAATTTTGAGCACAACAAAGCTTGGTTGTTAGCTGAGTCTGGTGGGTGTGGAGCAGAATTGAACAATGCTGATCCTCAATCTGTTCATTCTTCTTTCAGATTTAGTTTCTGTTCTCAAGTTGAGTTGGAGTCTTTGAATTTGAGTTCTTCTTCTGCTGCAACTGTTTTGATGGTGAATTTGGATAATGGAGTTAGTGAATCTCTTGTTAAAGAGTTGAAAGTGAGGAGAATTGAGTCTTTGGAGAAGACTATTTCTCCTGTTGCTCACTCTTTGATTAGGTTTAGCTATGGTGAAATTGTCAATGCTACTAGGAATTTCTCCAAAGGTAGGGTGTTGGGGAGAGGTGCATTGAGCTGTGTTTATAGGGGAAGAGTTGGACTTTTGAGAACTGTTGTAGCAATTAAACAGTTGGACAAAGAAGATAAGGAGTCTGCAAAAGCCTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAATCCAAATGTTGTTCCACTTGTTGGTTTTTGTATCGACTCTGAGGAGGGTTTGTTTTTGGTCTACAAGTATGTCTCGGGTGGAAGCTTGGAGCGACACTTGCATGGGAGGAAGAAAGGTGGCAACGGTAATTCAACACTTCCATGGTCTGTGAGGTACAAGGTTGCAATTGGGATTGCAGAGGCCATAGCTTATCTGCATAGTGGAACTGAAAGATGTGTTGTTCATAGAGACATTAAACCCTCTAACATTCTGCTTTCTTCTAAGAAGACTCCAAAGCTATGTGATTTCGGATTAGCAACATGGACATCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTTAAAGGAACATTTGGATATTTGGCTCCAGAGTATTTCCAACATGGGAAAATATCCGATAAGACTGATGTTTACGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGCCGGAAACCAATTGAAACGAAAAGGTCTCCAGGAGAGGAGAATTTAGTCTTATGGGCTAAACCTTATCTACAAAAGGGGAAAGGAGCCATTGAAGAGTTGCTTGATCCTCAACTGAAGTGCAATTTGCGATTCTCAAATCAAATTGGGAGAATGATTGAAGCAGCTGCTGCTTGTGTAACAAATGAAGAATCTAGGAGACCTGGCATACATGAGGTTATCGCAATACTGAAAGGTGAAGAAGAACCTGTTTTCTCTAAAAAAAAAAAGTCGAGTTTTCTTGGGAATGGATGCGTGATTGATTGTTATTCTCAACTACAACAATCGAGCGAGATGAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTTCAGAGTTTGAGGATGATGATTATCTCTATGTATGTTAA 1563 0.3871 MECETETSTDTTNNISNTHSSSSLVFSHNNNNKNIKIRTFLRKMIWEFGFLCIGKNPSKRNLDSDYQNDENGDKRMNFEHNKAWLLAESGGCGAELNNADPQSVHSSFRFSFCSQVELESLNLSSSSAATVLMVNLDNGVSESLVKELKVRRIESLEKTISPVAHSLIRFSYGEIVNATRNFSKGRVLGRGALSCVYRGRVGLLRTVVAIKQLDKEDKESAKAFCRELMIASSLHNPNVVPLVGFCIDSEEGLFLVYKYVSGGSLERHLHGRKKGGNGNSTLPWSVRYKVAIGIAEAIAYLHSGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKISDKTDVYAFGVVLLELITGRKPIETKRSPGEENLVLWAKPYLQKGKGAIEELLDPQLKCNLRFSNQIGRMIEAAAACVTNEESRRPGIHEVIAILKGEEEPVFSKKKKSSFLGNGCVIDCYSQLQQSSEMKSHLALAMLGVSEFEDDDYLYVC 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01897 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Trre6g01897 520 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g01897 520 Gene3D Transferase(Phosphotransferase) domain 1 260 479 - -
Trre6g01897 520 SUPERFAMILY Protein kinase-like (PK-like) 162 462 IPR011009 -
Trre6g01897 520 SMART serkin_6 182 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01897 520 FunFam Putative receptor-like serine/threonine-protein kinase 260 478 - -
Trre6g01897 520 Pfam Protein kinase domain 183 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01897 520 FunFam probable serine/threonine-protein kinase PBL7 143 259 - -
Trre6g01897 520 PANTHER OS08G0249100 PROTEIN 117 479 IPR046958 -
Trre6g01897 520 Gene3D Phosphorylase Kinase; domain 1 166 259 - -
Trre6g01897 520 ProSiteProfiles Protein kinase domain profile. 182 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01897 Trre-Chr6 15863555 15866608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01897 170 465 Trihelix Transcription Factor Family AT1G70460 43.289 3.01e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre6g01897 Pkinase 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01897 - - psat:127083811 850.506