Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01892 ATGGAAAATTTGTTGGGTCTGCTCAAAATTCATGTTCAAAGAGGTGTTAATCTTGCTATCAGAGATGTAGTTAGCAGTGATCCTTATGTTGTCATCAAAATGGGAAAACAGAAGCTGAAGACTAAGGTAGTGAAGAAGAATCTAAATCCTGAGTGGAATGATGAATTGACTTTATCCATTTCAGATCCTCGTACTCCAATTCATCTACATGTGTACGATAAGGACACATTTAGCATGGACGACAAAATGGGGGACGCTGAGTTCGACATCGGTCCATTTGTTGAAGCGGTAAAGATGCGTTTGGAAGGTCTCCCAAATGGTACTATAGTTACAAGGGTGCAACCTAGCAGACAAAATTACTTAGCAGAAGAGAGTCACATTGTTTGTTGTTGA 393 0.3969 MENLLGLLKIHVQRGVNLAIRDVVSSDPYVVIKMGKQKLKTKVVKKNLNPEWNDELTLSISDPRTPIHLHVYDKDTFSMDDKMGDAEFDIGPFVEAVKMRLEGLPNGTIVTRVQPSRQNYLAEESHIVCC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01892 130 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 100 IPR035892 -
Trre6g01892 130 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 129 IPR044562 -
Trre6g01892 130 Pfam C2 domain 7 92 IPR000008 -
Trre6g01892 130 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Trre6g01892 130 Gene3D C2 domain 1 116 IPR035892 -
Trre6g01892 130 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01892 Trre-Chr6 15808777 15810584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01892 1 97 C2H2 Transcription Factor Family AT4G05330 54.639 1.54e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01892 - - gmx:100793531 218.009