Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01886 ATGAAGAGAGATCACCAAGAAAGCTATGGTGGTGGAGTGAACATGAACAACAACAACAAAAACAACAACCTCAACAACAACAACAACAAAAACTTTGGTGAATGTTCATCAATGCAGAACACAAACAACACAAACGGAAAACAAAACATGTGGAGAGAAGAAAAAGACAACGGTGGTGGAATGGATGAGTTATTAGCAGCATTAGGTTACAAAGTTCGTTCTTCAGACATGGCTGATGTAGCTCAAAAGCTTGAACAACTTGAGATGGTTATGGGTAGTGCTGAAGAAGAAGGAATAAACCATCTTTCTTCTGATACAGTTCACTATGACCCAACCGATCTATATTCATGGGTTCAAACCATGCTCACTGAACTCAACCCTTCAACAACTGATTCACAAATCAATGACCCATTAAACCCTTCTTCCATTTTCAACGATGATTCTCAATATGATCTTAGCGTTATTCCTGGAATGGCCGCATACCCACCTCAAAACCATAACCAAATCCAAAACCAGAGCAATGAAATTGAAGTTTCCAACAGTAACAAACGGTTGAAAACATGGGTGGAGGAATCAGAATTGGAAGATGTTATACCGGCGTTATCACCGCCGGCGGAAACTACAAGACCGGTTGTTCTCGTTGATTCACAAGAAACAGGTGTTCGTCTTGTTCATACTTTGTTAGCTTGTGCTGAAGCGATTCAGCAAGAGAATCTGAAACTTGCTGATGCACTTGTGAAACATATCGGAGCTTTAGCATCGTCGCAAACCGGTGCGATGAGAAAAGTTGCTTCCTATTTCGCACAAGCACTTGCTCGGAGAATATACGGAATTTACCCAGATGAAACTATCGATTCATCTTTCTCCGATGTTCTTCACATGCACTTTTACGAATCTTCACCGTATCTGAAATTCGCTCATTTCACTGCAAATCAAGCTATTCTCGAAGCTTTCGCCGGCGCCGGAAGAGTCCACGTCATCGATTTTGGTCTCAAACAAGGGATGCAATGGCCGGCGCTTATGCAAGCACTTGCATTACGTCCCGGCGGTCCACCAACTTTCCGGTTAACCGGAATCGGACCACCACAACCCGACAACACCGATGCGTTACAACAAGTGGGTTGGAAATTGGCTCAGCTTGCTCAAACAATCGGAGTTCAGTTCGAATTTCGTGGATTCGTTTGTAACAGTTTAGCGGATCTTGACCCGAATATGCTTGAGATCCGACCCGGTGAAGCTGTTGCTGTTAACTCCGTTTTTGAACTTCACACTATGCTAGCCCGACCCGGATCCGTTGATAAAGTTCTCAACACTATTAAGAAGATTAACCCTAAAATCGTAACCATCGTTGAGCAAGAAGCGAATCATAACGGACCGGTTTTCGTAGACCGGTTCACGGAGGCTCTACATTATTACTCGAGTTTATTCGACTCGCTTGAAGGTTCTTGTTCTAATTCTAACTCGACCGGGTCCGGTTTGGTTAATCAGGATTTATTAATGTCGGAGGTTTATTTGGGGAGACAGATATGTAACGTGGTGGCTTATGAAGGAGTAGACCGGGTTGAGAGACATGAGACATTGAACCAGTGGCGGTCGAGAATGGGTTCGGCCGGGTTTGATCCGGTTCATTTGGGTTCTAATGCTTTTAAACAAGCGAGTACTTTGTTGGCTTTGTTCGCCGGAAGTGGTGGGTATAGGGTGGAAGAAAATAATGGGTGTCTTATGCTTGGGTGGCACACGAGGTCACTCATTGCTACTTCAGCTTGGAAGCTTCCACTCAGTGAGTCCAAGTGA 1794 0.4415 MKRDHQESYGGGVNMNNNNKNNNLNNNNNKNFGECSSMQNTNNTNGKQNMWREEKDNGGGMDELLAALGYKVRSSDMADVAQKLEQLEMVMGSAEEEGINHLSSDTVHYDPTDLYSWVQTMLTELNPSTTDSQINDPLNPSSIFNDDSQYDLSVIPGMAAYPPQNHNQIQNQSNEIEVSNSNKRLKTWVEESELEDVIPALSPPAETTRPVVLVDSQETGVRLVHTLLACAEAIQQENLKLADALVKHIGALASSQTGAMRKVASYFAQALARRIYGIYPDETIDSSFSDVLHMHFYESSPYLKFAHFTANQAILEAFAGAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHTMLARPGSVDKVLNTIKKINPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSCSNSNSTGSGLVNQDLLMSEVYLGRQICNVVAYEGVDRVERHETLNQWRSRMGSAGFDPVHLGSNAFKQASTLLALFAGSGGYRVEENNGCLMLGWHTRSLIATSAWKLPLSESK 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01886 597 Coils Coil 77 97 - -
Trre6g01886 597 MobiDBLite consensus disorder prediction 1 58 - -
Trre6g01886 597 Pfam Transcriptional regulator DELLA protein N terminal 62 128 IPR021914 -
Trre6g01886 597 Gene3D - 60 125 IPR038088 -
Trre6g01886 597 MobiDBLite consensus disorder prediction 10 48 - -
Trre6g01886 597 ProSiteProfiles GRAS family profile. 214 590 IPR005202 -
Trre6g01886 597 FunFam DELLA protein GAI 60 125 - -
Trre6g01886 597 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 172 586 IPR005202 -
Trre6g01886 597 SMART DELLA_2 62 135 - -
Trre6g01886 597 Pfam GRAS domain family 223 590 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01886 Trre-Chr6 15740021 15741814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01886 47 591 GRAS Transcription Factor Family AT1G14920 62.883 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre6g01886 GRAS 1e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01886 K14494 - gmx:100799695 883.634