Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01842 ATGGCTTCTTCCTTGGACATGTCACTTGATGATAGAATTAAGAACAACAGGAGTATCAGAGGCAGAGGTAGAGGACGTGGCAAAGCCCTTGCTGGCCGTGGAAGTGGGACTGTAGGTGGTGGAAGAAGGGCTGGTGCTGTTAATGGGAGAAGAGTGACTGGTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGCCCACTTATGGTCAACACTCGCCCATCATCTTATGCTATTGCCAAGGCAAGCTCAAAAAACTCTATTCGCAGAACCAAGGCTTTTCCATGGCAGAGCGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATACAGGGAGTAGAAGTTGACACAAAGTTGTATGTTTCCAACTTAGACAGAGGAGTTACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGGGACTTGAAGCGCTATGCTGTTCATTATGACAAGAATGGACACCCAACTGGTTCTGCTGAAGTTGTCTACAATAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAACAATGTGCTTTTGGATGGAAAGCCCATGAAAATTGAGATTGTTGGAACAAATTCAGAATTGCCTGTAACTGCACGAGTGAATGTCTCTGCGATGAATGGACAGAGAAAGAGGACAGTTGTAATGACGCCTAGAGGTGGTCGAGGTGGAGGTCCTGCCATGCTAAATCGCGGTGCTGGCTGGGGACGCCGTGGTGGCTCAAGGGGTGGCAGTGGTACTGTGCGGGGCAGAGGCCGAGGCCGAGGCCGTCCTGGCAGGGGTGGAGGTCGAGGCCGTGGAAGAAAGGATGGAGTTGAAAAGTCAGCTGAGCAACTTGACAAGGAACTGGAGACCTATCATGCGGAGGCTATGAACATCTCATGA 894 0.4911 MASSLDMSLDDRIKNNRSIRGRGRGRGKALAGRGSGTVGGGRRAGAVNGRRVTGNGGRTTGAVRRGPLMVNTRPSSYAIAKASSKNSIRRTKAFPWQSDLFEDSLRAAGIQGVEVDTKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMTPRGGRGGGPAMLNRGAGWGRRGGSRGGSGTVRGRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01842 297 SMART FoP_duplication_2 224 297 IPR025715 -
Trre6g01842 297 SUPERFAMILY RNA-binding domain, RBD 111 191 IPR035979 GO:0003676
Trre6g01842 297 MobiDBLite consensus disorder prediction 266 281 - -
Trre6g01842 297 MobiDBLite consensus disorder prediction 1 65 - -
Trre6g01842 297 Coils Coil 272 297 - -
Trre6g01842 297 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 294 - -
Trre6g01842 297 CDD RRM_THOC4 117 191 - -
Trre6g01842 297 Gene3D - 112 193 IPR012677 -
Trre6g01842 297 SMART rrm1_1 118 190 IPR000504 GO:0003723
Trre6g01842 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Trre6g01842 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Trre6g01842 297 MobiDBLite consensus disorder prediction 219 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01842 Trre-Chr6 15409611 15413135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01842 119 191 Eukaryotic Initiation Factors Gene Family AT2G23350 38.356 1.59e-08 53.5