Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01841 ATGGCTTCTTCCTTGGACATGTCACTTGATGATAGAATTAAGAACAACAGGAGTATCAGAGGCAGAGGTAGAGGACGTGGCAAAGCCCTTGCTGGCCGTGGAAGTGGGACTGTAGGTGGTGGAAGAAGGGCTGGTGCTGTTAATGGGAGAAGAGTGACTGGTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGCCCACTTATGGTCAACACTCGCCCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACCAAGGCTTTTCCATGGCAGAGCGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATACAGGGAGTAGAAGTTGACACAAAGTTGTATGTTTCCAACTTAGACAGAGGAGTTACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGGGACTTGAAGCGCTATGCTGTTCATTATGACAAGAATGGACACCCAACTGGTTCTGCTGAAGTTGTCTACAATAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAACAATGTGCTTTTGGATGGAAAGCCCATGAAAATTGAGATTGTTGGAACAAATTCAGAATTGCCTGTAACTGCACGAGTGAATGTCTCTGCGATGAATGGACAGAGAAAGAGGACAGTTGTAATGACGCCTAGAGGTGGTCGAGGTGGAGGTCCTGCCATGCTAAATCGCGGTGCTGGCTGGGGACGCCGTGGTGGCTCAAGGGGTGGCAGTGGTACTGTGCGGGGCAGAGGCCGAGGCCGAGGCCGTCCTGGCAGGGGTGGAGGTCGAGGCCGTGGAAGAAAGGATGGAGTTGAAAAGTCAGCTGAGCAACTTGACAAGGAACTGGAGACCTATCATGCGGAGGCTATGAACATCTCATGA 879 0.4926 MASSLDMSLDDRIKNNRSIRGRGRGRGKALAGRGSGTVGGGRRAGAVNGRRVTGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTKAFPWQSDLFEDSLRAAGIQGVEVDTKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMTPRGGRGGGPAMLNRGAGWGRRGGSRGGSGTVRGRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01841 292 Gene3D - 107 188 IPR012677 -
Trre6g01841 292 SMART FoP_duplication_2 219 292 IPR025715 -
Trre6g01841 292 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 289 - -
Trre6g01841 292 SMART rrm1_1 113 185 IPR000504 GO:0003723
Trre6g01841 292 MobiDBLite consensus disorder prediction 1 65 - -
Trre6g01841 292 MobiDBLite consensus disorder prediction 214 276 - -
Trre6g01841 292 Coils Coil 267 287 - -
Trre6g01841 292 MobiDBLite consensus disorder prediction 261 276 - -
Trre6g01841 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Trre6g01841 292 SUPERFAMILY RNA-binding domain, RBD 106 186 IPR035979 GO:0003676
Trre6g01841 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Trre6g01841 292 CDD RRM_THOC4 112 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01841 Trre-Chr6 15409611 15413135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01841 114 186 Eukaryotic Initiation Factors Gene Family AT2G23350 38.356 1.53e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01841 K12881 - gmx:100801491 366.696