LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g01835	ATGGCTGCAAAGCTTCTGCATTCTTTAGCAGATGATAATCAAGATCTGCAGAAGCAGATTGGATGTATGACTGGAATATTTCAACTCTTTGATCGTCATCAGATGCTCACGGCTCGCCGGATTAGTCAGAAGAGGCTTCCTTCTGGTAATTTGCACTTCAATGATGGCAGCTTCGAAAGAGATTCTGATAGCATACAGCATCAACAACAAATGGCAACTGAATCAAGCTTAAATAGAGGACTGAATGAAAAGCAAAGAATTTCGACAGAATCATCAAGAGCGTCATTCTCTTCTTGTTCATCATCAGTGTCCTCTTTGGACTTCAAGGCTGAAGTAGAGACTTCGTTTGAAACTCCTACAAGGGATACATTTATGAACCAACCCACTATCTCTCCCCGTTTTGGACGTCATTCCCTTGACCTGCGTGATGTAGTGAAGGATTCTATGTATAGGGATCCTCGAGGTCCGTCTGCGAAATCTACGGCCAAAGATCAATCTTCCATTCATGCTGTGAAGCACAGGGATTCTCCGCGACCTCTTCAGATGTCGAAATATGTTGATAGATCTTACGGAGTTGAAATAGATGAAAAGCAAAGTGTGCCTATTGATCTAAAGGAGTCGATCCGAGTCCTTTCTAAACTTCGAGAAGCACCTTGGCATTACGCAGAAAGTACTAGAGAACTTCCGAGATCGTCGCATCAAGTAAAAGATGCACACTGGAATTCAGTCTCGAAGGATGCTCCTTGGTTAGCTTATGACGGAAGAGAAACAAGTCGTTTATCTTTTGAATCGCGAGAGACGATCAAATCCACACCCAAGCTTAAAGAGTTTCCTAGGCATTCACTGGATAGTAAGGAAGGTTCATGGCGCACTTATAACTCCGATTCAAAGCCTAGCAACATCTCGAGAAATATTTACGGTGCCACCTCCACCTCCACCTCCACCTCCAACGAAAAATTCTCTAGTCTACAACAGTCTTCATCAACACAGAATCGGCTACCGAGTGTTGTCGCCAAACTAATGGGATTGGAAGCATTACCTGATTCCTCTTCGGCCGGTGATACTCAATCAGGTTCAACTGAAACTTACTCTGCGCAAGATAACGGCCAGTTTCCAAGATCATCTAAAAATGGATTCATTAGACCTCTTCGAGTTTCTAACTCTCCGAAAATCTCATTGAAAGATCCAACTTCCCCTAGACGGAAGAATCCTGATGTGGTTATGAAACCGGTCTCCAGTTCAAAGTTTCCAATTGAACCAGCACCATGGAAGCAGCATGATGCAAATAGAAACCCTCGGAAACAAATTTTAAGAACAACAAAAGTTCCATTAAGAACACAAGATTCATTTCCTTCGGTTTATAGTGAGATAGAGAAGCGGTTGAAGGACCTTGAGTTCAAACAATCTGGAAGGGATCTTAGAGCACTAAAGCAGATACTAGAAGCAATGCAAGAAAAGGGACTGTTAGAGAGCCGAAAAGAAGAACAAGTTCCAAATTTAGTTGGAAGTCGAAGTGACTATGAACCTAAAGCTACCAATGTAAATCAGAATTCAAGGTTGGTAAAGCAACAAAATCCTCAGAGAAACAATTTTCTGTCTTCTACAATCAAGGGAAATGATTCCGCAAGAGCTTTTGATTCTCCAATAGTGATAATGAAACCGGCAAAACTTGTAGAGAAATCTGAGATTTCTGCTTCTTCAGCTATTCCAATTGGTGGCTTTTCTGGTTCCAATAATAGAAACAACATATCTTCTACTCTACTAGCAAAAGAACATTCTCCAAAGAATTTTCGGAGGGACGCTTCTCCAAGTTCCACCGATAAGAAAACAAGTATTACAAAGACTACTAGATCTTTACAATCTCAATCAAGGTCAAACCAATTTCCAAAAGAAAGCCAAAGTTCAGTGAAGAGTTCAGGATCAGTGAGTCCAAGATTGCAACAGAAGAAGTTGGAGTTAGAGAAACGATCTCGTCTGCCTACACCACCATCAGATTCAAACAAAACAAGAAGGCAATCCAGTAAAAAGGCAGCGGAATCAGTTTCTCCAGGTGGAAAAGTTCGACAAAAAACTGTCAACTCACAGCATAGCGAAGAGCAACTGAGTGAGATAAGCAATGATTCTAGAAGTTATTACCAAGGGGATGAAATTTCTCTTCAATCTGACAGCATCACCGTTGACTCGAAATTGGATATTGAAGTCACTAGTAGTGTACGGTCTTCTGAAATCGATGACAGCCAAAGTCCATCCTTGAAGGCTATGAAAAAATTGGTTTCAGAAACAGTTCAGAAAAAATCAACACCAAGGTTAGATCAGGATGACACAATTGCAGAATTTGCATCAATGGTCCCAGAACATCCAAGTCCTAACTCCGTTCTTGATGGATCGGTATACAAAGATGACTTGCAATCGCCAGTAATGCAGACACCTAAAGATCCAAAAGCTCATAATGCTCAAGAAGCGAAAGATAATGAGGTCAAAGATCAATGGAAGCCTGATGACAATCTTTCATTTAACAGCACGGGATCTGGAGAGATCAATCGCAAGAAATTACAAAGCATAGATCATCTTGTTCAAAAGCTTAGACGGCTGAACTCCAATCACGATGAAGCTAGAAACGATTACATTGCTTCCCTATGCGAAAACTCAAATCCAGACCACAGATACATATCTGAAATACTACTAGCCTCAGGTCTCTTACTCAGAGACCTGAATTCTGAATTTTTGACATTTCAACTACACTCGTCGGGTCATCCTATTAACCCGGAGTTATTCCTTGTCTTGGAGCAGACCAAAGCAAGTAGTTTACTTTCGAAAGAAGAAAACAGCTTTGATGGAAAAGCTGCTTTCTCGAAGCAAACCACAGAGAAATTTCACCGAAAACTCATCTTTGATGCCGTGAACGAAATTCTTGTTGCAAAACTAGGTTACTCTCCTGAGCCATGGTTTCAGCCTAACAAACTCACAAAGAGAAACCTCAGTTCTCAAAAGCTTCTTAAAGAACTATGCTTTGAGATAGAAAAAGTTCAAACCAAGAAAACTGAATGCTGCTTAGAAGATGATGAAGAGGATGATGGTCTAAAAAGCATGTTGTGTGAAGATGTGATACATGGTTCAGTATGTTGGGAAGATTTCAATGGTGAAATACCTGGAATTGTGTTGGATGTTGAGAGATTGATATTTAAGGATTTGGTAAATGATATTGTGATTGGTGAAGCAGCTGGCTTGCGAGTCAAGTCATCGGTTCGGCGCAGGAAACTATTTGGAAAGTAG	3273	0.4085	MAAKLLHSLADDNQDLQKQIGCMTGIFQLFDRHQMLTARRISQKRLPSGNLHFNDGSFERDSDSIQHQQQMATESSLNRGLNEKQRISTESSRASFSSCSSSVSSLDFKAEVETSFETPTRDTFMNQPTISPRFGRHSLDLRDVVKDSMYRDPRGPSAKSTAKDQSSIHAVKHRDSPRPLQMSKYVDRSYGVEIDEKQSVPIDLKESIRVLSKLREAPWHYAESTRELPRSSHQVKDAHWNSVSKDAPWLAYDGRETSRLSFESRETIKSTPKLKEFPRHSLDSKEGSWRTYNSDSKPSNISRNIYGATSTSTSTSNEKFSSLQQSSSTQNRLPSVVAKLMGLEALPDSSSAGDTQSGSTETYSAQDNGQFPRSSKNGFIRPLRVSNSPKISLKDPTSPRRKNPDVVMKPVSSSKFPIEPAPWKQHDANRNPRKQILRTTKVPLRTQDSFPSVYSEIEKRLKDLEFKQSGRDLRALKQILEAMQEKGLLESRKEEQVPNLVGSRSDYEPKATNVNQNSRLVKQQNPQRNNFLSSTIKGNDSARAFDSPIVIMKPAKLVEKSEISASSAIPIGGFSGSNNRNNISSTLLAKEHSPKNFRRDASPSSTDKKTSITKTTRSLQSQSRSNQFPKESQSSVKSSGSVSPRLQQKKLELEKRSRLPTPPSDSNKTRRQSSKKAAESVSPGGKVRQKTVNSQHSEEQLSEISNDSRSYYQGDEISLQSDSITVDSKLDIEVTSSVRSSEIDDSQSPSLKAMKKLVSETVQKKSTPRLDQDDTIAEFASMVPEHPSPNSVLDGSVYKDDLQSPVMQTPKDPKAHNAQEAKDNEVKDQWKPDDNLSFNSTGSGEINRKKLQSIDHLVQKLRRLNSNHDEARNDYIASLCENSNPDHRYISEILLASGLLLRDLNSEFLTFQLHSSGHPINPELFLVLEQTKASSLLSKEENSFDGKAAFSKQTTEKFHRKLIFDAVNEILVAKLGYSPEPWFQPNKLTKRNLSSQKLLKELCFEIEKVQTKKTECCLEDDEEDDGLKSMLCEDVIHGSVCWEDFNGEIPGIVLDVERLIFKDLVNDIVIGEAAGLRVKSSVRRRKLFGK	1090

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	588	715	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	287	331	-	-
	Trre6g01835	1090	Pfam	Domain of unknown function (DUF4378)	886	1067	IPR025486	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	506	538	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	686	715	-	-
	Trre6g01835	1090	Pfam	DUF761-associated sequence motif	322	351	IPR032795	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	271	286	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	606	646	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	63	92	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	815	832	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	803	844	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	271	331	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	349	375	-	-
	Trre6g01835	1090	PANTHER	LONGIFOLIA PROTEIN	1	1088	IPR033334	GO:0051513
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	347	428	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	149	179	-	-
	Trre6g01835	1090	Coils	Coil	854	874	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	47	92	-	-
	Trre6g01835	1090	MobiDBLite	consensus disorder prediction	491	538	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g01835	Trre-Chr6	15282150	15286572	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g01835	134	1089	TRM (TON1 Recruiting Motif) Superfamily	AT1G74160	45.657	0.0	632

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g01835	-		-	gmx:100787391	1539.24