Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01834 ATGATGTCAAGTTCAAGAGGAGATGGTAATTATGAAGCAAAAGAAGGAGATGACAATAATATGAGTATATTGGAAAAAATTTCCAAGACACCTGCAAGTACTTCAAGACAATGGTCAAGTTCAAGTTTAAGAAATCCAAGAATTGTGAGAGTATCAAGAACATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGCACAATAAGAGGTTTAAGAGATAGAAGGATTAGGCTTTCCGTTCCGACCGCGATTCAATTGTATGATCTTCAAGATAAACTTGGTTTAGGACAACCAAGTAAAGTTATTGATTGGTTACTTGAAGCAACAAAATTTGATATTGATAAACTTCCACCACTTCAATTTCCTCAAAGCTTTTCACAATTTCATCATCTTCATCCACAAACCCTACTTCCTTTTCATGATCATCAATCAAGTAATGTCTTATCTCATGAACTTTCTCTTGGTCCTAATTTATATGATCCTAATTCCACATTTGTTGGAATTCAAAATCTTATGGCAAGGTCAAAATTTTGGGACATTGATTCAAGGATTAATAAAGGTAAAGAAGTTGAAAGAGAGTACTTTGGTGATAAAGGTAAGTGGATTAAAACAAATGATGAAGAAAATCAAGGTGGTGGAGAAACTAGTTACAACAATTTTCATCAAGTTTCAACTCAAAAGCTTTTCCCTATGGAGACTCATCACTCTAATTTTCTAAACAATGCTATGTCATATAACAATTATCATTCAGAAGCTTCTAATTTGTCTTTATCTCAATTTGGAACTAGTCATGGAATGTTCCAATCTCATCAACAAGTAGATCCTAATCAAAGTAGTGGAAATTCTTTGCAATTTCCATTTTCTTTACCAAATTCACAATTATTTTTTGGTCCTTCTTCATCTTCTACTACACCACCATCATCAACATCACTTTTGAATCCTTTTATGAACAATTCAGTTGAAAATGATCCAAGAGTACAATTCAATCATTTTCAGTTCATAAACTCAAGTTCTTCTCATCCTATGCCTCATCCTCTTATTCCATCTTTTCATCACTCATTCAATTCACCTCCAATTAGACCTTTTCCATTACCATTTAGCTCCAAACTTCTAGATTCGGATAACAATAACAACGGTAACCAACCGGATAATAAGGGTAGTCGTGATCGTTCTTGA 1173 0.3359 MMSSSRGDGNYEAKEGDDNNMSILEKISKTPASTSRQWSSSSLRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKFDIDKLPPLQFPQSFSQFHHLHPQTLLPFHDHQSSNVLSHELSLGPNLYDPNSTFVGIQNLMARSKFWDIDSRINKGKEVEREYFGDKGKWIKTNDEENQGGGETSYNNFHQVSTQKLFPMETHHSNFLNNAMSYNNYHSEASNLSLSQFGTSHGMFQSHQQVDPNQSSGNSLQFPFSLPNSQLFFGPSSSSTTPPSSTSLLNPFMNNSVENDPRVQFNHFQFINSSSSHPMPHPLIPSFHHSFNSPPIRPFPLPFSSKLLDSDNNNNGNQPDNKGSRDRS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01834 390 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 34 312 IPR005333 GO:0003700
Trre6g01834 390 MobiDBLite consensus disorder prediction 1 21 - -
Trre6g01834 390 Pfam TCP family transcription factor 57 126 IPR017887 -
Trre6g01834 390 ProSiteProfiles TCP domain profile. 57 115 IPR017887 -
Trre6g01834 390 MobiDBLite consensus disorder prediction 368 383 - -
Trre6g01834 390 MobiDBLite consensus disorder prediction 364 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01834 Trre-Chr6 15263002 15264174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01834 40 382 TCP Transcription Factor Family AT5G60970 38.108 5.47e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre6g01834 TCP 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01834 - - cam:101498052 538.495