Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01808 ATGCTTAGTGCCAAACAATTGCCAAACCTGGAGAAAGGTTTTCTTTCAACTATGAGAAACATATACAGTTGTGAAGTCCTCCTGAAAAGATGCTCAACGTCCTCCTACCGCTTTCATTGTTTTCATGTTAGTAAGGAGGCTGGTGAGAAGTGGATGTCTATGACTGATGAAAAGAAAAAACCTTATTTGGATAGATTTATTAAAGTGAAGGTAGAATATGAGAAGGCTATGGAAATCTATAATGCTATTGAAAAGAAAGAGCTAGAGAGTAGAAAGAGTCATTATAATTTATATAAGGGCTACTTCACATATGCTATCAATTGCTAA 327 0.3517 MLSAKQLPNLEKGFLSTMRNIYSCEVLLKRCSTSSYRFHCFHVSKEAGEKWMSMTDEKKKPYLDRFIKVKVEYEKAMEIYNAIEKKELESRKSHYNLYKGYFTYAINC 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01808 108 SUPERFAMILY HMG-box 37 80 IPR036910 -
Trre6g01808 108 Pfam HMG (high mobility group) box 43 81 IPR009071 -
Trre6g01808 108 Gene3D High mobility group box domain 14 98 IPR036910 -
Trre6g01808 108 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 81 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01808 Trre-Chr6 14931715 14934430 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre6g01808 HMG_box 8.4e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01808 K25507 - nnu:104591676 68.9366