Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01802 ATGGTAAGTATAAAAGAAACCCTTCTCCGACGAGTTGAATTATCCAAATCAACTTTCTCAAATGCCATTGATATCGTCGATCATCTCCGTTCAAATTACTCCGATTACAACCGATGCAGTTATATCAGACTCTTATACTCTGTTCAAAATGCTCTTGATTCTTTAAAAAGCGACAACAAAGCTGAATTAAAGAAACTTTCGGTTTCTAAGAAAGGCAACTCCGGTGGTGGTGGTGATGTTAAGAAGTGGCCGATGTTTAAGGATTTAAGTGGAGATGTGATGGAGAAGATAAAGAATAGTTTGGAAATACCTCTTACGTTAATGTGTCAACCTAAGTTGTGTACAGAGTTTGGTTTGAAACCAGTTACTGGAATTTTGTTACATGGTCCACCTGGTTGTGGAAAAACTAAACTTGCTCATGCTATTGCTAATGAGGTTGATGTTCCTTTTTATCCTATTTCTGCTACTCATGTTGACACTTCGCTTGTCGGTGCGTCTGAAAATAATATTAGAGAGATTTTCTCTAAAGCCAAAAAGACTGCTCCATCAATTATCTCTATTGATGAGATTGATGCAATTGCTATGAAAAGACAGAGTTCAAGTCGATACATGACAGGAATTGAGCAGTTATTAACTTGCATGGATGAAGCTTGTAATAGTTCAGGGAGTTCTGATGAACCTACTGGTCATGTTCTTGTAATTGGAGCCACAAATAGGCTTGATGCTATTGACTCTGCTTTGAGAAGGCCTGGTCGTTTTACTCTTGAGATTGATGTTGGCATTCCCGATGAATCTGCCAGGGAGGCGATACTTTTATTGCATACTCGAAATTGTAGTGACAATCTTGACAGTTCGGTTGATCTGCAAAAGATAGCAAGGTCTACACCGGGATTTGTTGGTGCTGATTTGGAAGCTCTAGTTGTTAAAGCTGGCGAACTGGCTTTGGGGAGGATAATTGATGAAAGGAAACGCGAATTACCTAAAGATCTCACAAGTGAAACTAATGCTGTCAGGTGGAAGAAACCCTGGTTGCCTCAAGAAATAAATAGATTTGTAATCAAAATGACTGATTTTGAGGAAGCAGTCAAAATGGCACAACCATCACTAAGACGAGAAGGATTCTCTCCCATTCCTGATGTTAAATGGGAATACGTTGGTGCGCTTGATCATGTAAGAGAGGAGTTTGATCAACACATTGTAAAGCGCATAAAAAACCCCGATGTTTATGAGGGACTTGGGTTGGATCGTGATACGGGATTTTTGCTTTATGGGCCTCCAGGTTGTGGTAAAACACTGATCGCCAAAGCTGTTGCCAATGAGGCAGGAGCTAATTTCATTTATATTAAGGGCCCCGAGCTTCTAAATGTTGGAGAAAACGAGAGTGGAGTCAAGAAATTATTTGATCGTGCAAGGGCATGTGCACCATGTATACTTTTTTTTGACGAGGTTGATGCTTTGACAGACCATGGTGATGAAAGTGTACGGAAACAGTTGCAGATTGAGTTAGATAGCAAAGAGCAACGCAGAGGTATTTTCGTGATTGGTGCAACAAATAGGCCTGAGGTGATCGACAGTGCTCTCCTACGTCCGGGTAGATTTGGCAATCATACTTATATTCCTGTTCCAAGCCCAGACGGCCGTGTCTCAATATTGAAAGCTCTTGCAATGCACAAGGAAGCTCTTGCAAGGCGTATGGAAAATCGTGCAAGGTTTAAGCTTATGCCTATTGATGCCTGTGTGAATTTGAGCTCCATTGCAAAATCGAAAGCTTGTACAAACTTTAGTGGTGCCGACCTTGCTGCATTGATGGACAAAGCAATATTAACTGCTCTCGAAGAGAAGCTGACCACAGCGGCAGAAAAAAGTGATAAATTGACAGTCGAGGCAAGGCATTTTAAGGTTGCGCTGAGCAAAGTCTCTCCCTCTGTGTCGAAAAAGCAAAGGGAACACTATGAGAAAATTTCAAAGGTCCTTAAAGCGGCATGA 1986 0.4119 MVSIKETLLRRVELSKSTFSNAIDIVDHLRSNYSDYNRCSYIRLLYSVQNALDSLKSDNKAELKKLSVSKKGNSGGGGDVKKWPMFKDLSGDVMEKIKNSLEIPLTLMCQPKLCTEFGLKPVTGILLHGPPGCGKTKLAHAIANEVDVPFYPISATHVDTSLVGASENNIREIFSKAKKTAPSIISIDEIDAIAMKRQSSSRYMTGIEQLLTCMDEACNSSGSSDEPTGHVLVIGATNRLDAIDSALRRPGRFTLEIDVGIPDESAREAILLLHTRNCSDNLDSSVDLQKIARSTPGFVGADLEALVVKAGELALGRIIDERKRELPKDLTSETNAVRWKKPWLPQEINRFVIKMTDFEEAVKMAQPSLRREGFSPIPDVKWEYVGALDHVREEFDQHIVKRIKNPDVYEGLGLDRDTGFLLYGPPGCGKTLIAKAVANEAGANFIYIKGPELLNVGENESGVKKLFDRARACAPCILFFDEVDALTDHGDESVRKQLQIELDSKEQRRGIFVIGATNRPEVIDSALLRPGRFGNHTYIPVPSPDGRVSILKALAMHKEALARRMENRARFKLMPIDACVNLSSIAKSKACTNFSGADLAALMDKAILTALEEKLTTAAEKSDKLTVEARHFKVALSKVSPSVSKKQREHYEKISKVLKAA 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01802 661 Gene3D - 542 637 - -
Trre6g01802 661 Gene3D - 85 262 IPR027417 -
Trre6g01802 661 Gene3D - 378 652 IPR027417 -
Trre6g01802 661 Gene3D - 263 372 - -
Trre6g01802 661 Coils Coil 608 628 - -
Trre6g01802 661 Pfam AAA+ lid domain 285 321 IPR041569 -
Trre6g01802 661 Pfam AAA+ lid domain 580 632 IPR041569 -
Trre6g01802 661 PANTHER AAA-FAMILY ATPASE 208 656 - -
Trre6g01802 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 658 IPR027417 -
Trre6g01802 661 SMART AAA_5 416 543 IPR003593 GO:0016887
Trre6g01802 661 SMART AAA_5 121 263 IPR003593 GO:0016887
Trre6g01802 661 Pfam ATPase family associated with various cellular activities (AAA) 421 540 IPR003959 GO:0005524|GO:0016887
Trre6g01802 661 Pfam ATPase family associated with various cellular activities (AAA) 125 259 IPR003959 GO:0005524|GO:0016887
Trre6g01802 661 ProSitePatterns AAA-protein family signature. 511 529 IPR003960 GO:0005524|GO:0016887
Trre6g01802 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 372 IPR027417 -
Trre6g01802 661 ProSitePatterns AAA-protein family signature. 231 249 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01802 Trre-Chr6 14871851 14875708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01802 353 658 Calmodulin-binding Proteins AT3G56690 37.500 5.94e-52 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01802 K14571 - gmx:100809594 637.106