Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01801 ATGGGAAGGTTCCAACAAACACTTCTCCCTCGTATCAATAAATGCAAATCTAAATTCTCTACCGCCGATGAAATCGTCCACTATCTCCGTTCAACTTACTCCGATTACCACCGCATCAAGTATCAAACACTCCTTTACATTGTTAACAATGCTCTTCCTTCTTCTAACAACAACAATGCCGCCGGAGTACTACAGAAACAAATCGAAGCAGCTGGTTCTGAATTAACGAAACTTTCCCTTTCGGAAAACAACGATGATCCTAAAAAGGTTAAGAATGTTCCGAAGAGGCCGATGTTCGAGGATTTAGGTGGAAATGGAATGGAGAAGATAAAGAATGAATTGGAGGCACCTCTTATGTTAGTATGTCAACCTAAGTTGTGTAGAGAGTTTGGATTGAAACCAATTACTGGAATTTTGTTACATGGTCCACCTGGTTGTGGAAAAACTAGACTTGCTCATGCTATTGCTAATGAGGCTGAAGTTCCTTTTTATCCTATTTCTGCTACTCATGTTGTTAGTGGAGCTGCTGGAGAATCTGAAAATAATATTAGAGAGCTTTTCTCTAAAGCCAAAAAGACTGCTCCATCAATTATCTTTATTGATGAGATTGATGCAATTGCTATGAGAGGAGATAATTCACAGCGACAAATGGAGACACGAATTGTGGCGCAGTTATTAACTTGCATGGATGAAGCTTGTAGTAGTTCAGGGAGTTCTGATGAACATACTGGTTATGTTCTTGTAATTGGAGCCACAAATAGGCTTGATGCTATTGACTCTGCTTTGAGAAGGCCTGGTCGCTTTGCTCTTGAGATTGATGTTGGCATTCCTGATGAATCTGTCAGGGAGGCGATACTTTTCTTGCATACTCAAAATTGCAGTGACAAGCTTGACAGTTCGGTTGATCTGCAAAAAATAGCAAGGTCTACGCCGGGATTTGTTGGTGCTGATTTGGAAGCTTTAGTCGGAAAAGCTGGCGAACGGGCATTGGACCGGATAATTGATGAAAGGAAACACGAATTATCTAAAGATCTCGTGAGTGAAACTAATGCCGGCAGGTGGAAGAAACCTTGGTTGCCTGAAGAAATAAACAGATTTGCAATAAAAATGACTGATTTTGAGGAAGCAGTCAAAATGGCACAACCTTCGTTAACAAGAGAAGGATTCTCTCCCATTCCTGATGTTAAATGGGAAGACGTTGGTGCGCTCGATCATGTAAGAGAGGAGTTTGTTCAACACATTGTAAAGCGCATAAAAAACCCCGACGTTTATGAGGGACTTGGGTTGGATCGTGATACGGGATTTTTGCTTTATGGGCCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAAGCGGGAGCTAATTTCATTTATATTAAGGGTCCCGAGCTTCTAAATAAATTTGTTGGAGAAAGCGAGCGTGAAGTCCGGAAATTATTTTATCGTGCAAGGGCATGTGCACCATGTATACTTTTTTTTGACGAGGCGGATGCTTTGACAACAACAGAACATGGAAATGAAGGTGGACGGGTTATTGATGGAATACGGAAACAGTTGCAGATTGAGTTAGATGGCGCAGAGCAACGCAAAGGTGTTTTCGTGATTGGTGCAACAAATAGGCCTGAGGTGATCGACAGTGCTCTCCTACGTCCTGGTAGATTTGGCAATCATATTTATATTCCTGTTCCAAGCTCAGACGGCCGTGTCTCTATATTGAAAGCTCTTGCAATGCATAAGGAAGCTCTTGCAAGGCGTATGGAAAATCGTGCAAGGTTTAAGCTTATGCCTATTGATGCCAGTGTGGATTTGAGCTCCATTGCAAGATCAAAAGCTTGTGAAAACTTTAGTGGTGCCGATCTTGCTGCATTGATGGACAAAGCAATATTGGCTGCTCTCGAAGAGAAGCTGACTACAACGGAGAATAAAAGTGATACATTGACCGTTGAGTCAAGGCATTTTGAGGTTGCGCTAAGCAAAGTCTCTCCCTCTGTGTCAGAAAAGCATATTTCAAAGCTCCTTAAAGCCGCATGA 2043 0.4205 MGRFQQTLLPRINKCKSKFSTADEIVHYLRSTYSDYHRIKYQTLLYIVNNALPSSNNNNAAGVLQKQIEAAGSELTKLSLSENNDDPKKVKNVPKRPMFEDLGGNGMEKIKNELEAPLMLVCQPKLCREFGLKPITGILLHGPPGCGKTRLAHAIANEAEVPFYPISATHVVSGAAGESENNIRELFSKAKKTAPSIIFIDEIDAIAMRGDNSQRQMETRIVAQLLTCMDEACSSSGSSDEHTGYVLVIGATNRLDAIDSALRRPGRFALEIDVGIPDESVREAILFLHTQNCSDKLDSSVDLQKIARSTPGFVGADLEALVGKAGERALDRIIDERKHELSKDLVSETNAGRWKKPWLPEEINRFAIKMTDFEEAVKMAQPSLTREGFSPIPDVKWEDVGALDHVREEFVQHIVKRIKNPDVYEGLGLDRDTGFLLYGPPGCGKTLIAKAVANEAGANFIYIKGPELLNKFVGESEREVRKLFYRARACAPCILFFDEADALTTTEHGNEGGRVIDGIRKQLQIELDGAEQRKGVFVIGATNRPEVIDSALLRPGRFGNHIYIPVPSSDGRVSILKALAMHKEALARRMENRARFKLMPIDASVDLSSIARSKACENFSGADLAALMDKAILAALEEKLTTTENKSDTLTVESRHFEVALSKVSPSVSEKHISKLLKAA 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01801 680 ProSitePatterns AAA-protein family signature. 246 264 IPR003960 GO:0005524|GO:0016887
Trre6g01801 680 Pfam AAA+ lid domain 604 658 IPR041569 -
Trre6g01801 680 Pfam AAA+ lid domain 300 336 IPR041569 -
Trre6g01801 680 Gene3D - 393 675 IPR027417 -
Trre6g01801 680 PANTHER AAA-FAMILY ATPASE 89 674 - -
Trre6g01801 680 Pfam ATPase family associated with various cellular activities (AAA) 436 565 IPR003959 GO:0005524|GO:0016887
Trre6g01801 680 Pfam ATPase family associated with various cellular activities (AAA) 138 274 IPR003959 GO:0005524|GO:0016887
Trre6g01801 680 ProSitePatterns AAA-protein family signature. 536 554 IPR003960 GO:0005524|GO:0016887
Trre6g01801 680 Coils Coil 633 653 - -
Trre6g01801 680 FunFam Ribosome biogenesis ATPase RIX7 87 275 - -
Trre6g01801 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 674 IPR027417 -
Trre6g01801 680 Gene3D - 567 662 - -
Trre6g01801 680 SMART AAA_5 134 278 IPR003593 GO:0016887
Trre6g01801 680 SMART AAA_5 431 568 IPR003593 GO:0016887
Trre6g01801 680 Gene3D - 277 387 - -
Trre6g01801 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 377 IPR027417 -
Trre6g01801 680 Gene3D - 81 275 IPR027417 -
Trre6g01801 680 FunFam ATPase, AAA family protein 393 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01801 Trre-Chr6 14865025 14870350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01801 130 667 Calmodulin-binding Proteins AT3G56690 35.702 4.39e-107 346