Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01797 ATGGGAAAGTTCCAAATAACGCTTCTCCGTAGAATCGATTCCTGCAAATCAAGTTTCTCAACCGCCGATGAAATCGTCAACCATCTCCGTTCAACTTACTCCGATTACCACCATAACGATTATCAATCACTCCTTCAGTTAGTTACCAACGCTCTTCCTGCTACTCACACCACCACCACCACCACCAACAACAACAACAATCGAAAGAGACTTCACATTCATGAATCTCAAACTTCTACTCCCCCTGATTTTGCTCCTGAGAGCACCGGCAACAAAGCTGTTAACGGCAGCGGCGGTGAGAAAGAAGATTCTAAAACTTCTCCAAAGAGACATAAGATTCATGAATCTGAATCTGAAGATGATTATGATTATGATGATTTTGACGATGAAAATGATGATGATGATGATGATGAAAGAATGCAAAATGTGAAATCAACGAGCATGGGAACTTCGTCTGAGTATTCTTCCGGAGACAAAGTAGTGTCAAAGACAGAAATGAAACGGACACAACCGTTTCAGTTAATGCAGTTTTGGACAGGTGGCGACGGTGTCGGTGGTGGTGATGATGGAAAGAAGAAAATGAAGGGGACTATGTTTAAGGATTTAGTTGGGAATGAAATGAAGAAGATAATTAAGGAATTGAAGATAACTGTTAAATTATTGCGTCAACCTGAATTGATTAGAGAGTATGGAATGAAACCTAAAAGGGGAATTTTGTTACATGGTCCACCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATTGCTAATGAAGCTGAAGTTCCTTTTTATCCTATTTCTGCCACTGATTTTGTTACTGGTGTCACTGGCGGATCTGAAGAAAAGATTAGAGAGCTTTTCTCTAAAGCAAAAGGGACGGCTCCATCAATTATCTTTATTGATGAGATTGATGCAATTGCTTCAAAACGAGAGGATTTAAAGCAACAGGTGGAGTCACGAATTGTAACACAGTTATTAACTTGCATTGATGGAGCTGGTTATTCAGGGATTTCTGATGAACCTACTGGTTATGTTCTTGTGATTGGAGCCACAAATAGGCTCGATGCTGTTGACTCTGCTTTGAGAAGGCCTGGTCGTTTTGATCGTGAAATTCTTGTTGGCATTCCTGATGAATCTGCCCGGGAGGAGATCCTTATTATGCATACTCGAAATTGCAGTCATAAGCTTGACGATTCGATTGATCTGCGAAAAATAGCCAGGTCCACGCCAGGATTTGTTGGTGCTGATTTAGAAGCTCTTGTTGGCGAAGTTAGCGAACTGGCATTTCAGAGGGTAATAGATGAAATGGAACGTGAATCATCTAATGATGAAGGCCAGTGGAAGGAACATTGGTCGCCTCAACAAAAAAATAAATTTGCAATCAAAATGTCTGATTTTGAGGAAGCAGCCAAAATGGTGCAACCTTCATTAACAAGAGAAGGATTCTCTCCCATTCCTGATGTTAAATGGGAAGATGTTGGTGCACTTGATCATGTAAGAGAGGAGTTTGATCAACACATTCTAAAGCGCATAAAAGACCCCGACATTTATGAGGGACTTGGGTTGAATTGTGATACTGGGTTTTTGCTTTACGGACCTCCAGGATGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGAGCTAATTTCATTTATATTAAGGGTCCCGAGCTTCTAAATAAATATGTCGGAGAAAGCGAGCATGCTGTCCGGAAATTATTTGATCGTGCAAGAGCATGTGCACCATGTATACTTTTTTTTGACGAGGTGGATGCTTTGACAACAAAACATGTTAATGAAGGAGATACACGGGTTATTGAAAGAGTGCTCAAACAGTTGCTCATTGAGTTAGACGGTGCAGAGCAACGCAAAGGTGTTTTCGTGATTAGTGCAACAAATAGGCCTGAGGTGATCGACAGTGCTCTCCTACGGCCGAGTAGATTTGGTAATCTTATCTATATTCCTCTTCCAAGTCCAGACGATCGTGTTTCGATATTGAAAGCTCTTGCAAGGGGTAAGGAAACGCTTGCAAGGCGTAAGCAAACTCATGCAAGGTTTACGCTTATGCCTATTGATGCCAGTGTGAATTTGAGCGCCATTGCAAGAATGAAAGCTTGTGAAAACTTTAGTGGTGCTGATCTTGCTGCATTGATGGACAAAGCAATATTGGCTGCTCTTAAAGAAAAGCGGACCGCAACCGGAAAAAAAAGTGATACATTGACTGTCAAGGCTAAGCATTTTGAGGTAGCACTAAGTAAAGTCTCTCCCTCTGTGTCGGAAGAGCAAAGGAAGTACTATCAGCAACTTTCAAAGAACCTTAAAGCGGCGTGA 2340 0.4158 MGKFQITLLRRIDSCKSSFSTADEIVNHLRSTYSDYHHNDYQSLLQLVTNALPATHTTTTTTNNNNNRKRLHIHESQTSTPPDFAPESTGNKAVNGSGGEKEDSKTSPKRHKIHESESEDDYDYDDFDDENDDDDDDERMQNVKSTSMGTSSEYSSGDKVVSKTEMKRTQPFQLMQFWTGGDGVGGGDDGKKKMKGTMFKDLVGNEMKKIIKELKITVKLLRQPELIREYGMKPKRGILLHGPPGCGKTRLAHAIANEAEVPFYPISATDFVTGVTGGSEEKIRELFSKAKGTAPSIIFIDEIDAIASKREDLKQQVESRIVTQLLTCIDGAGYSGISDEPTGYVLVIGATNRLDAVDSALRRPGRFDREILVGIPDESAREEILIMHTRNCSHKLDDSIDLRKIARSTPGFVGADLEALVGEVSELAFQRVIDEMERESSNDEGQWKEHWSPQQKNKFAIKMSDFEEAAKMVQPSLTREGFSPIPDVKWEDVGALDHVREEFDQHILKRIKDPDIYEGLGLNCDTGFLLYGPPGCGKTLIAKAVANEAGANFIYIKGPELLNKYVGESEHAVRKLFDRARACAPCILFFDEVDALTTKHVNEGDTRVIERVLKQLLIELDGAEQRKGVFVISATNRPEVIDSALLRPSRFGNLIYIPLPSPDDRVSILKALARGKETLARRKQTHARFTLMPIDASVNLSAIARMKACENFSGADLAALMDKAILAALKEKRTATGKKSDTLTVKAKHFEVALSKVSPSVSEEQRKYYQQLSKNLKAA 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01797 779 SMART AAA_5 234 377 IPR003593 GO:0016887
Trre6g01797 779 SMART AAA_5 524 661 IPR003593 GO:0016887
Trre6g01797 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 471 IPR027417 -
Trre6g01797 779 MobiDBLite consensus disorder prediction 76 163 - -
Trre6g01797 779 Coils Coil 769 779 - -
Trre6g01797 779 Gene3D - 188 374 IPR027417 -
Trre6g01797 779 Gene3D - 660 755 - -
Trre6g01797 779 FunFam ATPase, AAA family protein 486 665 - -
Trre6g01797 779 MobiDBLite consensus disorder prediction 77 95 - -
Trre6g01797 779 Pfam AAA+ lid domain 399 439 IPR041569 -
Trre6g01797 779 Pfam AAA+ lid domain 697 751 IPR041569 -
Trre6g01797 779 ProSitePatterns AAA-protein family signature. 629 647 IPR003960 GO:0005524|GO:0016887
Trre6g01797 779 FunFam Ribosome biogenesis ATPase RIX7 188 374 - -
Trre6g01797 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 775 IPR027417 -
Trre6g01797 779 Pfam ATPase family associated with various cellular activities (AAA) 529 659 IPR003959 GO:0005524|GO:0016887
Trre6g01797 779 Pfam ATPase family associated with various cellular activities (AAA) 238 373 IPR003959 GO:0005524|GO:0016887
Trre6g01797 779 Gene3D - 486 770 IPR027417 -
Trre6g01797 779 MobiDBLite consensus disorder prediction 119 137 - -
Trre6g01797 779 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Trre6g01797 779 Gene3D - 376 480 - -
Trre6g01797 779 MobiDBLite consensus disorder prediction 98 118 - -
Trre6g01797 779 PANTHER AAA-FAMILY ATPASE 399 777 - -
Trre6g01797 779 MobiDBLite consensus disorder prediction 143 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01797 Trre-Chr6 14811483 14816637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01797 454 760 Calmodulin-binding Proteins AT3G56690 40.260 3.46e-63 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01797 K14571 - gmx:100809594 759.599